BtaEX6098269 @ bosTau6
Exon Skipping
Description
Bos taurus complement component 4A (C4A), mRNA. [Source:RefSeq mRNA;Acc:NM_001166485]
Coordinates
chr23:27176229-27177009:-
Coord C1 exon
chr23:27176911-27177009
Coord A exon
chr23:27176645-27176728
Coord C2 exon
chr23:27176229-27176361
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTAACCCCCCACAGGCT
3' ss Score
9.42
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GGAAGTGCCCTCGACAGCGCCGGGCCCTGGAGCGTGGGCAGCAGGACTTGGAGGGTTACCGGATGAAATTCGCCTGCTACTCTCCCCGAGTGGACTACG
Seq A exon
GCTTCCAGGTTAAGGTTCTCCGAGAAGACAGCAGGGCTGCTTTCCGCCTCTTTGAGACCCGTATCACCCAAGTCCTGCATTTCA
Seq C2 exon
CCAAGGATGCCAGGGCCACCGCTGATCAGACCAGAAACTTCCTGGTCCGAGCCTCTTGCCGCCTTCAGTTGGAACCTGGGAAAGAATATCTGATCATGGGTCTGGATGGGGCCACTTACGACCTCAAGGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037533-'50-52,'50-50,51-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(9.9=32.4)
A:
PF0175916=NTR=FE(25.2=100)
C2:
PF0175916=NTR=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTGGAGGGTTACCGGAT
R:
CCCCATCCAGACCCATGATCA
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]