DreEX6040209 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16757658-16758837:-
Coord C1 exon
chr16:16758745-16758837
Coord A exon
chr16:16758517-16758600
Coord C2 exon
chr16:16757658-16757790
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTATAATTTTTTCCCAACAGCAT
3' ss Score
8.59
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GAGGTTGTTTCACAGAGAAGAAAACCATTGAGATGGAAATCACCAAAACTGATAGATTTGATTATGCTTGTTACCATTCCAACACCGACTATG
Seq A exon
CATTTGAAGTCACTGTGAATTCAGTAACCGAAGAGAGCAATTTTATATTATATTCAACATCTGTGAACGTGGTTCTCCGAAATA
Seq C2 exon
CGGGAGACTTGAGTGTGAGTCCAGAGAACACACGAGTGTTTGCCAAGAGAAAGCACTGCAAGGGTGAGCTGAAACAGGGTGAGAGGTACCTTATCATGGGCAATGATGGCCCCACCAAAGACTCAAGTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'47-46,'47-44,48-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(9.0=31.2)
A:
PF0175916=NTR=FE(25.2=100)
C2:
PF0175916=NTR=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTTTCACAGAGAAGAAAACCA
R:
ACCTCTCACCCTGTTTCAGCT
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]