BtaEX6098699 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019386 | BOLA-NC
Description
Bos taurus non-classical MHC class I antigen (BOLA-NC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105616]
Coordinates
chr23:28355810-28357481:-
Coord C1 exon
chr23:28357206-28357481
Coord A exon
chr23:28356016-28356303
Coord C2 exon
chr23:28355810-28355909
Length
288 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGATTCTTCCTCAGACC
3' ss Score
10.24
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
Exon sequences
Seq C1 exon
GGTCTCACACCATCCAGTGGATGCACGGCTGCGGCGTGGGGTCGGACGGGCGCCTCCTCCGCGGGTATAATCAGCTCGCCTATGACGGCAAAGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACAGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCAGGTGAGGCGGAGAGATTCAGGAACTACCTGGAGGGCGAGTGCGTGAAGTTGCTCCGCAGACACCTGGAGAACGGGAAGGACACGCTGCTGCGCGCAG
Seq A exon
ACCCTCCAAAGGCACATGTGGCCCATCACCCCAGCTCTGAGCGTGAGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGAGGAGATCTCACTGACCTGGCAACGCAATGGGGAGGACCAGATCCAGGACATGGAGCTTGTGGAAACCAGGCCTTCAGGGGACGGAACCTTCCAGAAGTGGGCGGCCCTGGCGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCGTGTGCAGCACGAGGGGCTTCAGGGGCCCCTCACCCTGAGATGGGGTAAAGGAGGGG
Seq C2 exon
AACCTCCTCAGCCCTCTGTCCCCATCATGGGCATCATTCTTGTCCTGGTTCTCCTCGTGGTGGCTGTGGTGGCTAGAGCTGTGATCTGGAGTAAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019386-'3-10,'3-8,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.309 C2=0.029
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.2=94.6)
A:
PF0765410=C1-set=WD(100=85.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCGGGTATAATCAGCTC
R:
ATCACAGCTCTAGCCACCACA
Band lengths:
305-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]