BtaEX6098795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013065 | HFE
Description
Bos taurus hemochromatosis (HFE), mRNA. [Source:RefSeq mRNA;Acc:NM_001012399]
Coordinates
chr23:31614238-31618677:+
Coord C1 exon
chr23:31614238-31614376
Coord A exon
chr23:31617685-31617948
Coord C2 exon
chr23:31618378-31618677
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTGCCCTCTCCCCAGGGT
3' ss Score
9.92
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
Exon sequences
Seq C1 exon
CCCGTTTCCCCGCCCTACCCAAGCGGCTGAAAAGCGCCGGGACGCGCGGTCCGAGCCGGGAAAATGGGCCCGCGAGCCCGGCCGGCGCTTCTCCTCTTGATCCTCCTGCGGACGGCGGCCACGCAGGGGCGACCGCCGC
Seq A exon
GGTCACACTCCCTGCGCTTCCTCTTCATGGGCGCCTCCAAACCAGACCTCGGGCTGCCCCTGTTTGAGGCTTTGGGCTACGTGGATGACCAGCTGTTCGTGTCCTATGATCATGAGAGTCGCCGTGCAGAGCGGCGCGCCCCATGGCTCTGGGGCAGGGCCACCAGCCAGCTGTGGCTGCAGCTGAGTCAGAATCTGAAAGGCTGGGACCACATGTTCATCGTGGACTTCTGGACGATCATGGACAACCACAACCAAAGCAAGG
Seq C2 exon
TAACGAAGCTGGGGGCGTTGCCAGAGTCCCACACCCTGCAGGTGATCCTGGGCTGTGAGTTGCAAGAGGACAACAGCACCAGAGGGTTCTGGAAGTACGGGTACGATGGGCAGGACCATCTTGAATTCCGGCCTGAGACACTGGATTGGAGAGCAGCAGAGCCCAGGGCCCAAGTCACCAAGCTGGAGTGGGAAGTGAACAAGATTCGGGCCAAGCAGAACAGGGCCTACCTGGATCGGGATTGCCCCGAGCAGCTGCTGCATTTGCTGGAGCTGGGGAGAGGGCCTCTGGAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013065-'0-3,'0-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(47.6=98.9)
C2:
PF0012913=MHC_I=PD(51.9=95.0)
Main Skipping Isoform:
ENSBTAT00000017371fB3226
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCTTGATCCTCCTGCG
R:
AATCCCGATCCAGGTAGGCC
Band lengths:
293-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]