RnoEX0041767 @ rn6
Exon Skipping
Gene
ENSRNOG00000016967 | Hfe
Description
homeostatic iron regulator [Source:RGD Symbol;Acc:2793]
Coordinates
chr17:43661276-43665989:+
Coord C1 exon
chr17:43661276-43661446
Coord A exon
chr17:43664495-43664758
Coord C2 exon
chr17:43665690-43665989
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGCTGACTTCCCCAGGTT
3' ss Score
7.58
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCAGCAATGGCTACAGGGTGACTTCTTGGATCCTCCACGTTTCCAGGTCCTAGTGAAAACCGGTGGACCCAGCTGGAGGCATGGACCGATCAGCTGGGCTCCCTGTGCGGCTGCTATTGCTGCTGCTGTTGTTGCTGCTGTGGTCCGTGGCCCCGCAGGCGCTGCGGCCCG
Seq A exon
GTTCACATTCTCTACGATATCTCTTCATGGGTGCCTCAAAGCCAGACCTCGGGCTGCCTTTCTTTGAGGCTCTGGGTTATGTGGATGACCAGCTCTTTGTATCCTACAATCACGAGAGTCGCCGTGCTGAGCCCAGGGCCCCATGGATCTTGGGGCAGACATCAAGCCAGCTGTGGCTGCAGCTGAGTCAGAGCCTGAAAGGGTGGGATTACATGTTCATAGTGGACTTCTGGACCATCATGGGCAACTATAACCACAGTAAGG
Seq C2 exon
TCACGAAGTTGAGAGTGGTGCCTGAGTCTCACATCCTGCAGGTGATCCTAGGATGTGAGGTGCATGAAGACAACAGTACCAGTGGCTTCTGGAAATATGGCTACGATGGGCAAGATCACCTTGAATTCTGCCCCAAGACACTGAACTGGAGTGCAGCCGAGCCAAGGGCCTGGGCCACCAAGATGGAGTGGGAAGAGCACAGGATCCGTGCCAGACAGAGCAGGGACTACCTGCAGAGGGACTGCCCCCAGCAGCTGAAGCAGGTCCTGGAGCTCCAGAGAGGGGTTCTGGGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016967_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012913=MHC_I=PU(47.6=98.9)
C2:
PF0012913=MHC_I=PD(51.9=95.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATTGCTGCTGCTGTTGT
R:
AGGTAGTCCCTGCTCTGTCTG
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]