RnoINT0070508 @ rn6
Intron Retention
Gene
ENSRNOG00000016967 | Hfe
Description
homeostatic iron regulator [Source:RGD Symbol;Acc:2793]
Coordinates
chr17:43661276-43665989:+
Coord C1 exon
chr17:43661276-43661446
Coord A exon
chr17:43661447-43665689
Coord C2 exon
chr17:43665690-43665989
Length
4243 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACCAACATTTTCATTTCCAGTCA
3' ss Score
8.29
Exon sequences
Seq C1 exon
TCAGCAATGGCTACAGGGTGACTTCTTGGATCCTCCACGTTTCCAGGTCCTAGTGAAAACCGGTGGACCCAGCTGGAGGCATGGACCGATCAGCTGGGCTCCCTGTGCGGCTGCTATTGCTGCTGCTGTTGTTGCTGCTGTGGTCCGTGGCCCCGCAGGCGCTGCGGCCCG
Seq A exon
GTGAGTGCGGGAGGAAAAGGTGGGGGTGTGGGACGCAAAACCGAAAGTAGCTTCCTATGCTCCTGGAGTTTCTCCCTTCAGAATCCCTCTACGATCTCCCGATCTCCCTTCCAGCTCTCTGCACGCAGACCCTGAGCAGGAACACCTGCCACACAGCTATCTGCCTGGGGCACCTCTGCCCCTGCTCTGTCAGGGTGTCACTAGGCAGCCATGTGAGGAGCCACGTTGGCTTACCTGAGCCTGGGGTCTCGGTCTCCAATCTCTGTTTCAGTGTTTTTATTGTGGACTGTGTTATCCTACCTCCCTAACGGACCTGGGATCTGAAATTTCTCACCAAAGGGTGACCAAAGTCGGTTCTGGGAAAGGATGTTTTCCTTGCGCTGGGTCGAACCCCACTGTGTCACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCTTTGTTTTTAGATAAAGCAAAGGGAGCGCTGGGTGGGGGTCTTGGACCTTTCCGCATTCTTGGCATTTGTTCTTTCATCTCGAAACGTCATTTTTATTTCAAATGGATGTAATATTGTAACCAAAGATTTTAGGGCAGAAGGCCAGGACTCTAGCGGCCCTTGTGGTTGGTAACAGTTCCAAATAAGAAGTCCAGTAATAACGAAACAGTTCTATTCGGTCTAGCCATACTGGCAAGATCAAGTGACCCAGCAAGAGTCCATCTTCAGGGTCCTGCCATGACATTTAGATTTAAACAGAAAGCAAAGGATTCCTCTAGATAGCTCCTGGATCCTGCATCCCAGTCCATAAATTGTTCACCTGTTTGTTGTTAGGGCACAATGTAACAATTTGTTCTGCTCCTATGTGCTACCTAGACCTCATAGATAATTGCTCTGGTGTGATGGAGTGGGGAAAACAGGGTCGGTCCTGCCCTGAGGCTTTGATGGTATTCCTGTAATCCAAGGGAACTTCAGGTTTGGGACAATTATATCTTTGTGCCTTCATCCTTGGAAGAGAATAAGATATGTTAAGAAAGGAGAGTCCACATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATCCCTAGAACAAAGGAAACTCAAGACGGATGATCAAAATGTGAATGCTTCACTCCTTCTTTAAATGAGGAAAAAGAATACCCTTGGCAGGGAAGGGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCACAGGTGGCCCATACATATACAGCCACCCAATTAGGCAAGATGGATGAAGCAAAGAAGTGCAGACCGACAGGAGCCGGATGTAGATCGCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAATAGGTCCCCCATTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGTGCTCGAGACCCCAAAAGTACAACAATGTCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGTCCCCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAACTAGACTATGCGGGGAGGGTGGCAATGGGGGGAGGTTTGGGAGGGGAACACCCACAAGGAAGGGGAGGGGGGAGGGTGATGTCTGTCCGGAAACCGGGAAAGGGAATAACACTTGAAATGTATATAAGAAATACTCAAGATAATAAAAAAAAAAAAAAGAAAGGAGAGTCCAGCAGGAAAAAGTCTGAGGAGACACAGAAGGCAGGCTAAGCACTGTGGGTAAGAGGATAGTACCTTCTGACAGAGTCACCTTCTGAGCACCTGGTTCTTGCCCAGTGTTCCTTGACCTTCCTAATATTGCAACCCTTTAATACAGTTTCTCAGGTTGTGGTGATCCCAATCATAAAATTTTGTTGCTATTTTATAAGTGAAATTTTGCTGTTTTGAATCATAATGTAAATATTTGATATGCAGGGTATCTGATATGTGACCCCCTAGGGTAGATCATTGTTCTGTAGGACCTTGTTCAGAAGGGCTTTGCTGATTTGCACATTAAAAAGGATTTAGCAAGCCTTTTCTAAAGGATGCCAAAGTGCTGCTTAATACACTTTAATAATGCTCAGATCTGTGATCCTCTTTGACTATGCACTGGGAAACAGCAGTTACTGCCAGTTAACTAGCTTACATCTTTCCTCAGGTTGCAAAGAACATAAACTTAAGTCTGACCTTTTTTTTTCCCTTCCAGAAACCATGGCATGGGGTGTCTCCCTATGTAGTTCAGACTGGCCTGGAACTCACCTATGCATATAAGGACGAACTCAAAGCTGAGATAATCCTCCTGCCTCAGTCTCCAGAGTATTAGGGTCAGAACTGTGAGCCACCACTCTATGGCAACAAACTTTTGTGAAGCGCTGACCCCATGCCAGGTGCAATTCTAAGCTAAGGCAACCTTGTTCCAGAATTGAGGGAAAGTGATGGGAAAATGCCCATGCTGAGAGTTGCTGTCAGTTCCCTTTCCTGGAAGCCCTCTGTTTGCTGACAGATTGTCCTGAGTTATATCTCAGGACACTCACCGGCATTTTTTAGACAACATCTGTACTTGAAAATGTTCAGAGACGGAAGTGGAGAAAACCCAGTACCTCCAACTCCTTAGGATTTTGATCTTAATGGATTCAGCAGCAACTCCTAGCTCAGCCCGCATAGCTAGGGAAACCCAAAGATCTTCCAGAGTCTAGGTCAGGGGAAGTTGGGGTGGGGGTGACCTATCCACTCAAGTAGAGAGCATCAAAGTGAGCAGAATAAGAGCAAGAGGCCAGAACAGCCAGGGCTGTGCAGGGAAGAGAAGAACTGTGTCACTCCACAGGGAGGATGCACTAGTAGTAGGAGGTAACCCAGGGCTGTGGAACTTCTGCATCGTGATCCTGCTGTCTGCTGGCTGTCCATTCTGAATGCTTGCTGACTTCCCCAGGTTCACATTCTCTACGATATCTCTTCATGGGTGCCTCAAAGCCAGACCTCGGGCTGCCTTTCTTTGAGGCTCTGGGTTATGTGGATGACCAGCTCTTTGTATCCTACAATCACGAGAGTCGCCGTGCTGAGCCCAGGGCCCCATGGATCTTGGGGCAGACATCAAGCCAGCTGTGGCTGCAGCTGAGTCAGAGCCTGAAAGGGTGGGATTACATGTTCATAGTGGACTTCTGGACCATCATGGGCAACTATAACCACAGTAAGGGTATGTAGAGAGGGGAGTCACTTCCCTGAGGTACTAAGAGAATAGAACTATTTTCCTACCTTGGGAATATAGCTTTGAAAAAGTAACTTTTATTCTCCTGATGTAGTTGATGTCTAGGAGGCTTTCTGCCTCCATGTGCTAATCTAGGCCTACTCAGGGAAGCTTCTAGCCTCTGTACAGTCAATCTAGGACTAGAATGTTCTCGGCCTCTGAGACTTGCTGCTCAATAAGCTCACTTTTTCTAGCTCCTTCTGAACTCTAGCTGGTTTATTCAACTCAGACATTCTGGCCCAAACTCCTCTCCCAGCTGCTTATTCAGTCTGGCTTTTCTCTCAGCCTCTGCATTACTGTGCTTGACCTCACACTAACTCTGGCAATGTTTTCCAATCTTCTTGTTCCTTCTCATTTCCTTACTTATACTGTCTTCACCTGTGTCTAGTTTGTTCTCTCTTCAATCTGTCTCTGTAAAGCTCTCTGGTAAACCTGCCTCCTCCTCCCTCTCTGTGCTGCTCTAGTCTCCCTCTCCACCCTACTGCACTGCTCTCCACAAACTCTATTCCTACACTGCACTCTCTCGTTCCTGTACTGTCTGTCTCTTCCTTTTCCTTTCTCTTCTTGTGACAGTTGGGTATATCCTATTCTGTCACTTTGTCTGCCTCACAATTACACATCCCTTTCAAACATGGGTGCTTCCTTCTACAAACTAACTCTACCTTCGCTGTTTGCTATTAAAGGTGAGTAATAAGGTGTGTTTATATGTCACACAGAGGGATTAGAATGCTAAGGACCCAGCCACACAAACTAGAAACAGGTTCAAATATCCTGTAATATCTTAAAGTGAGATCCTGGGGTTGGGGTGGGGGGAAACCAAGAGGGAGAACATTCAATACTTGGGGATGGTAAAGACAAAAACCAACATTTTCATTTCCAG
Seq C2 exon
TCACGAAGTTGAGAGTGGTGCCTGAGTCTCACATCCTGCAGGTGATCCTAGGATGTGAGGTGCATGAAGACAACAGTACCAGTGGCTTCTGGAAATATGGCTACGATGGGCAAGATCACCTTGAATTCTGCCCCAAGACACTGAACTGGAGTGCAGCCGAGCCAAGGGCCTGGGCCACCAAGATGGAGTGGGAAGAGCACAGGATCCGTGCCAGACAGAGCAGGGACTACCTGCAGAGGGACTGCCCCCAGCAGCTGAAGCAGGTCCTGGAGCTCCAGAGAGGGGTTCTGGGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016967:ENSRNOT00000022809:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012913=MHC_I=PD(51.9=95.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]