BtaEX6099822 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15842724-15846211:+
Coord C1 exon
chr26:15842724-15842812
Coord A exon
chr26:15843696-15843767
Coord C2 exon
chr26:15846083-15846211
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTCTCTTCTCTAAGGGT
3' ss Score
8.71
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTGTATCTGTTGCTGATCGAGAGGCCAGTCTAGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
Seq A exon
GGTGGCCCATATCATGATGTCTTACATAGCATATTAGGGGCATATACATGTTACCGACCGGATGTTGGTTAT
Seq C2 exon
GTCCAAGGGATGTCCTTCATAGCAGCAGTTCTCATTCTCAACTTGGAAGAAGCAGATGCCTTCATTGCATTTGCAAATCTCCTGAATAAGCCATGCCAGTTAGCCTTTTTTCGTGTGGATCACAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693-'14-14,'14-12,15-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(12.8=100)
A:
PF0056613=RabGAP-TBC=FE(10.2=100)
C2:
PF0056613=RabGAP-TBC=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATCGAGAGGCCAGTCTA
R:
ACTGGCATGGCTTATTCAGGA
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]