MmuEX6032688 @ mm10
Exon Skipping
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38911007-38914057:+
Coord C1 exon
chr19:38911007-38911095
Coord A exon
chr19:38913191-38913262
Coord C2 exon
chr19:38913929-38914057
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTCCCTAAGGGT
3' ss Score
9.42
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
Seq A exon
GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT
Seq C2 exon
GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720-'20-20,'20-19,23-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(12.8=100)
A:
PF0056613=RabGAP-TBC=FE(10.2=100)
C2:
PF0056613=RabGAP-TBC=FE(18.6=100)
Main Skipping Isoform:
ENSMUST00000037302fB4045
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATCTGTTGCTGACCGAGA
R:
GATTCGCGAACGCAATGAAGG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types