BtaEX6099860 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6N4]
Coordinates
chr26:16234242-16258451:+
Coord C1 exon
chr26:16234242-16234404
Coord A exon
chr26:16234562-16234711
Coord C2 exon
chr26:16258291-16258451
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTCCTCCTGGTAGGAA
3' ss Score
10.1
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTTTCAAAAGTCTATGGCCCTGTGTTCACTGTGTATTTTGGCATGAAGCCCATCGTGGTCTTGCATGGATATGAAGCAGTGAAAGAAGCCCTGATTGATCTGGGAGAGGAGTTTTCTGGAAGAGGAATGTTTCCATTGGCTGAAAGAGCTAATATAGTAAATG
Seq A exon
GAATCCTTTTCAGCAATGGGAAGACATGGAAGGAGATACGGCGCTTCTCCCTCATGACCCTGAGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAAGCCTGCTGCCTGGTGGAGGAGTTGAGAAAAACCAATG
Seq C2 exon
GGTTGCCCTGTGACCCCACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCAGAACCGTTTTGATTATAAAGATCCAGTTTTTCTAGATCTAATGGAAAGATTGAACGAAATCCTCAGGATTCTGAGCTCTCCATGGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023955-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAGTGAAAGAAGCCCTG
R:
TGAACCCATGGAGAGCTCAGA
Band lengths:
252-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]