DreEX6015237 @ danRer10
Exon Skipping
Gene
ENSDARG00000009874 | cyp2k31
Description
cytochrome P450, family 2, subfamily k, polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-091113-2]
Coordinates
chr3:8389925-8392836:-
Coord C1 exon
chr3:8392674-8392836
Coord A exon
chr3:8392430-8392579
Coord C2 exon
chr3:8389925-8390085
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTAAATCGTTTCCCTGCAGGAA
3' ss Score
9.99
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGTCTAAAACATATGGGCCAATTTACACAGTGCATATGGGCCCTAGAAAAGTGGTAGTCCTGTCAGGATACAAGACGGTCAAGGAGGCACTGGTGAATCTTTCAGAGGAGTTTGGAGACAGAGATATTTCACCCATATTCCACGATTTCAACCAGGGTTATG
Seq A exon
GAATTGTTTTTTCCAATGGTGAAAACTGGAAGGAAATGAGACGCTTTGCTCTGTCAAACCTACGAGACTTTGGAATGGGCAGAAAGAGAAGTGAAGAACTGATCATTGAAGAGATCAAACAATTAAAGGAGGAATTTGAGAAGTTTAGAG
Seq C2 exon
GAAAACCATTTGAAACGAAGATGCCCATAGCTATGGCCATTGCAAACATCATCGCTTTGATTGTCTACAGCATCAGATTTGAATACACCAACACTAAATTACACTGCATGATTGGACGAGCTTATGAAAATGCAAGGTTGACTGGATCACCATCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009874-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCATATGGGCCCTAGA
R:
AGCTCGTCCAATCATGCAGTG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]