BtaEX6099865 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MEU8]
Coordinates
chr26:16132281-16138444:+
Coord C1 exon
chr26:16132281-16132443
Coord A exon
chr26:16132630-16132779
Coord C2 exon
chr26:16138284-16138444
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCCCCTGCTGGTAGGAG
3' ss Score
6.76
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CTCTCAAAAGTCTACGGCCCTGTGTTCACTCTGTATTTTGGCATGAACCCCCTGGTGGTCTTGCATGGATATGAAGCAGTGAAAGAAGCTCTGATCGGCCTGGGAGAGGAGTTTTCTGGAAGAGGCAGTTGCCCAGTGATTCAAAGAGCTTCTAAGGGATATG
Seq A exon
GAGTCATTTTCAGCAATGGGAAGATATGGAAGGAGACCCGGCGCTTCTCCCTCATGACCCTGCGGGATTTCGGGATGGGGAAGAGGAGCATGGAGGACCGTGTTCAACAGGAAGCGTGCTGCCTGGTGGAGGAGTTGAGAAAAACCGATG
Seq C2 exon
GGTTGCCCTGTGATCCTACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCAGAATCATTTTGATTATAAAGATCAGATTTTTCTAGATCTAATGGAAAGACTGAATGAAAACGCCAGAATTCTGGGCTCTCCATGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020375-'3-3,'3-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(10.8=100)
C2:
PF0006717=p450=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGGTCTTGCATGGATA
R:
GGCGTTTTCATTCAGTCTTTCCA
Band lengths:
247-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]