BtaEX6100920 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34373915-34377688:-
Coord C1 exon
chr26:34377584-34377688
Coord A exon
chr26:34375926-34376033
Coord C2 exon
chr26:34373915-34374226
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTCCTACCCTTAGAAA
3' ss Score
10.3
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGCCTACAAGGCAGAGCACGAGCAGTCCGTCCATCAGTACAGCATTAGCAAAGACGAGCCTCTCTTCCTACAGGCCCGAGCCAACGCTGCCAATCTCAGCGAG
Seq A exon
AAACTGTATAAGAGCAGCTGGGAAAACCAGAAGGCGAAAGCATTTGATCTGCGTCTTGACTCCTTGGCCTTCCTGGCAGCCAAAGCCAAGAGGGACCTGGCCAGTGAG
Seq C2 exon
GTGAAGTACAAAGAAGATTATGAAAAATCCAGAGGGAAGCTCATTGGAGCTCAGGGTGCCCAGGGGGATTCGCAAATGAGCCACTCGCTGCAAATGTCCAAGCTCCAGAGTGAACTGGAATACAAGAAGGGCTTCGAGGACACCAAGTCTCAGTGCCATGTCCCCCTGGACATGATCCACCTCGTGCATGCCCGCAAGGCTCAGCACTTAGCCACAGACATAGGCTACAAGACGGCATCCCATCACTTTACAGCTTTGCCCACAGACATGAAGGTGGAATGGGCCAAGAAGGCTTACGGTTTACAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=PU(53.6=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCGTCCATCAGTACAGCA
R:
GGACATGGCACTGAGACTTGG
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]