MmuEX0032296 @ mm10
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56351432-56355586:-
Coord C1 exon
chr19:56355482-56355586
Coord A exon
chr19:56354120-56354227
Coord C2 exon
chr19:56351432-56351743
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTAAATCTCCCCCAGACC
3' ss Score
8.68
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGCCTACAAGGCAGGAAACGAGCAATCCGTCCATCAGTACACCATCAGCAAAGACGAGCCTCTCTTCTTACGAGCCCGGGCCAATGCTGCTCAACTCAGCGAG
Seq A exon
ACCCTGTACAAGAGCAGCTGGGAAAAGCAGAAGGCCAAAGGGTTTGAGCTGAGACTTGACTCCTTGGCATTCCTGACAGCCAAAGCCAAGAGAGACCTGGCTAGTGAG
Seq C2 exon
GTGAAATACAAAGAGGACTATGAAAGGTCCAGAGGGAAACTCATTGGGGCGAAGAGTGCACAGGGGGATTCGCAGATGAGCCACTCCCTGCAGATGTCGAAGCTACAGAGTGACCTGGAGTACAAGAAGGGCTTTGAAGACACCAGATCTCAGTGCCACATCTCCCTTGACATGGTTCACCTCGTCCATGCTCGCCAGGCACAGCACCTAGCCACAGACGTAGGCTACAGGACAGCGTCTCACTGCTTCACGGCTCTGCCCACAGACATGAAGGTGGAGTGGGCCAAGAAGGCTTACGGCCTGCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'26-27,'26-26,27-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=PU(53.6=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACGAGCAATCCGTCCAT
R:
AAGGGAGATGTGGCACTGAGA
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types