GgaEX6041030 @ galGal4
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr6:27009974-27011460:-
Coord C1 exon
chr6:27011356-27011460
Coord A exon
chr6:27010909-27011016
Coord C2 exon
chr6:27009974-27010285
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTCATCTCTTTAGAAA
3' ss Score
9.12
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTTGCCTACAGGTCAGGAAAAGAGCAGTTTCTTCATCAGTACACCATCACCAAAGATGACCCTGTCTTCTTACTGGCCAAAGCAAATGCTGCCAATATCAGTGAG
Seq A exon
AAACTGTACAGAAGTAGCTGGGAGAAGCAGAAGGAAAAAGGATTTGTTCTTCGTCTGGATGCTTTGTCATTCTTGACAGCTAAGGCAAAGAGGGATCTGGCAAGTGAT
Seq C2 exon
ATTAAATATAAGGAAGGTTATGAGAAGATGAAGGGTAAGCTGATTGGAGTAAAAGCTGTGGAGGAAGATTCAAAGATGGCTCATTCCCTTCAAATGTCAAAACTGCAGAGCGATCTGGAGTACAAGAAGGCATTTGAGGACACAAAGAATCAGTTCCAGGTCTCCATGGACATGGCTAACCTTGTCCATGCCAAAAAGGCTCAGAATTTGGCTTCAGATAAAGGATACAGGACAGCCCTCCATCACTACACTGTCTTGCCTACTGACAGGAAAGTGGCATGGGCCAAATGGGCGTATGGATTGCAAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'28-24,'28-23,29-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
A:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGTCTTCTTACTGGCC
R:
TTGGCATGGACAAGGTTAGCC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]