DreEX6036138 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23049512-23050242:-
Coord C1 exon
chr9:23050166-23050242
Coord A exon
chr9:23049943-23050050
Coord C2 exon
chr9:23049512-23049823
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTGATCATTTTCAGAAA
3' ss Score
9.56
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ACAAGCTCAAGATTCATGTGATGCCTGACAACCCTGAAATTATCCTGGCCAAGGCCAACGCATTAAACATGAGCCAG
Seq A exon
AAACTCTACAAAGCTGGTCTCGAGGAAATGAATAAAAAAGGCTATGATCTCAAACCAGATGCTATTTCAATTTTGGCTGCCAAAGCTGGCAGAAATATTGCTAGTAAT
Seq C2 exon
TACAAGTATAAGTTGGCATATGAGAAAGCCAAAGGCCACCACGTCGGCTTCCGTAGCATCCAGGACGATCCCTTGCTGGTGCACTACATGCAGGTGGCAAAGATGCAGAGCGAGAGGAACTACAAGAAAGATTACCACAAGTCCAAGCTGAAATACCACACCCCTGTGGACATGCTGAGTGTTGTACAGGCCAAAATGGCCTCAAAGGTTCAGACAAATGCAGGATACAAGCAGCAGTTCCATCATTACAACCTGCTGCCTGATGCCATGAACCTGGTGTTAGCTCGCTCCATGAACCTCACCTCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'37-37,'37-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(59.3=61.5)
A:
PF0088013=Nebulin=PD(33.3=25.0),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGATGCCTGACAACCCTG
R:
TTGGCCTGTACAACACTCAGC
Band lengths:
256-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]