GgaEX6043262 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36892959-36893962:-
Coord C1 exon
chr7:36893858-36893962
Coord A exon
chr7:36893598-36893705
Coord C2 exon
chr7:36892959-36893270
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTGTTTTGAATTAGAAA
3' ss Score
8.03
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGCTCTACACTGATAAATGGAACAAAGAGAAGACCAGCATTCATGTTATGCCAGATACTCCAGAAATTCTGCAGTCTAGAGTGAATCAGATCACAATGAGTAAT
Seq A exon
AAACTATACAAAGCTGGATGGGAGGAAGACAAGAAGAAGGGTTATGACATGCGGCCAGATGCTATTCCAATAAAAGCAGCCAAAACTTCCCAAGACATTGCAAGTGAT
Seq C2 exon
TATAAATACAAATTAGCCCATGAAAAAGCGAAAGGAAAGCATATTGGGTTCCGCAGCCTTGAAGACGACCCCAAGCTGGTGCACTTCATGCAGGTGGCTAAGATGCAATCTGATCGTGAATACAAAAAAGATTACGAGAAGGCAAAGACTAACTTCCATACTCCAGTTGACATGCTCAGTGTTGTGGCAGCCAAGAAAGCACAGGAAGTGGCTACAAATGCAAACTACAAAAACTTGATCCATGTCTACAATGTTTTGCCCGATGCTATGAGTCTTGAATTAGCCAAAAACATGATGCAGATACAAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'31-31,'31-30,32-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.167 C2=0.087
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATACTCCAGAAATTCTGCA
R:
TTTCTTGGCTGCCACAACACT
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]