MmuEX6101236 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52278774-52279948:-
Coord C1 exon
chr2:52279844-52279948
Coord A exon
chr2:52279632-52279739
Coord C2 exon
chr2:52278774-52279085
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGCTTTTGGTTTAGAAA
3' ss Score
7.88
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGCTGTACACTGAGAAGTGGAACAAAGACAAGACCAGCATTCATGTCATGCCTGACACTCCAGACATCTTGCTCTCCAGAGTAAACCAGATCACAATGAGTGAT
Seq A exon
AAACTCTACAAGGCTGGCTGGGAAGAAGAGAAGACGAAAGGCTATGATCTCAAGCCTGATGCCATCGCAATAAAGGCTGCAAAGGCCTCCAGAGATATTGCCAGTGAT
Seq C2 exon
TACAAGTACAAGCAAGCCTATGAACAATCCAAAGGGAAGCACATTGGCTTCCGCAGCCTGGAAGACGACCCCAAGCTGGTGCACTTCATGCAGGTGGCCAAGATTCAGTCAGACCGGGAATACAAGAAGGGCTATGAGAAATCCAAGACATCTTTCCACACCCCGGTGGACATGTTCAGTGTGGTGGCAGCCAAGAAGTCCCAGGAAGTGGCCACCAACGCCAACTACAGGAACATCATCCACACCTACAACATGCTTCCTGATGCCATGAGCTTTGAGTTGGCCAAGAACATGATGCAGATTCAAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'50-56,'50-55,51-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCCTGACACTCCAGACA
R:
TGCCACCACACTGAACATGTC
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types