BtaEX6101297 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022715 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr26:42803663-42811088:+
Coord C1 exon
chr26:42803663-42803847
Coord A exon
chr26:42809839-42810227
Coord C2 exon
chr26:42810820-42811088
Length
389 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCTGCCCCTCCCAGGTG
3' ss Score
10.77
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AGCTGCTTTGCCTGCAAAATCACATGGAAGCCAGAGTGAGGACGAGCTACCTCCAATCCCTGGGCTACTCTGTCAGGGACCTTGCCATTCCCGGCTCGGACTCAAGCTACCAGTGTCAGCCCCAGATTACGTCGAGCCTGGTGACGTTCGTGATCCCCTACTCCGGCTGCGGCACCATCCAGCAG
Seq A exon
GTGGATAACGACACCATTACCTACTCCAACTTCCTCAAAGCGACTGCTTCAAGAAGCATCATCAATAGGAAGAGGGACCTCCAAATTCACGTCAGCTGCAAGATGCTCCAGAACACCTGGGTTAACACGGTCTATGTTACTAATGACACCATAGACATTGAGAACACACAATACGGCAATTTTGACGTGAACATTTCCTTTTATACATCCTCTTCATTCCTGTATCCGGTGACCAGCAGCCCATACTATGTGGACCTAAACCAGAATTTGTACCTTCAGGCTGAAATCCTCCGTTCTAACCCTTCCCTAGCCTTATTTGTGGACACCTGTGTGGCATCACCAAATCCCAATGACTTTACATCTTTGACCTACGATCTCATCCAGAGCGG
Seq C2 exon
GTGTGTGAAGGATGAGACCTACCGATCCTACCACCAGCCCTCGTCCAACATCGTCCGCTTCAAGTTCAGTTCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGAAGTGCAAGATGGTCGTGTGCAGGGCGTATGACCCCTTCTCCCGCTGCAACAGAGGCTGCATTGTGAGGGCCAAGAGGGATGTGAGCTCCTACCAGGAGAAGGTGGATGTCGTCCTGGGACCCATCCAGCTGCAGGCCTCGCCCCAGAAGAGGAACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022715-'27-31,'27-30,28-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(23.7=95.2)
A:
PF0010018=Zona_pellucida=FE(51.8=100)
C2:
PF0010018=Zona_pellucida=PD(23.7=64.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGCTACCTCCAATCCCT
R:
AGGAGCTCACATCCCTCTTGG
Band lengths:
345-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]