HsaEX7006820 @ hg38
Exon Skipping
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122637128-122643736:+
Coord C1 exon
chr10:122637128-122637312
Coord A exon
chr10:122640040-122640449
Coord C2 exon
chr10:122643122-122643736
Length
410 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCCTGCCTCTCCTAGGCA
3' ss Score
8.74
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACCTGCTCTGTCTGCCAAATCACATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGAGTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAG
Seq A exon
GCAGACAATGACACCATCGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCTTCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGGCAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGACTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTTCACGTCTTTGACTTATGATCTAATCCGGAGTGG
Seq C2 exon
ATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCGCTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTCTTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCAGCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCGGGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGACCTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-'67-66,'67-61,68-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(23.0=95.2)
A:
PF0010018=Zona_pellucida=FE(53.1=100)
C2:
PF0010018=Zona_pellucida=PD(23.0=63.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAATCACATGCAAGCCAG
R:
CTCAACACACAGCCTCGGTAG
Band lengths:
349-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains