BtaEX6102685 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40497709-40501934:-
Coord C1 exon
chr29:40501806-40501934
Coord A exon
chr29:40499767-40499883
Coord C2 exon
chr29:40497709-40497825
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTCCTCTCTCCCTAGACA
3' ss Score
10.54
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGCCCACGGACCCTGCGGGGAATATGGCTGTGACCTCACCTGTAACCACGGCGGCTGTCAGGAGGTGGCCCGAGTGTGCCCCGTGGGCTTCTCCATGACCGAGACAGCGGTTGGCATCAGGTGTACCG
Seq A exon
ACATTGATGAATGTTTAAGCTCCTCTTGCGAGGGCCACTGCGTGAACACGGAAGGCGGGTTCGTGTGCGAGTGTGGGCCGGGCATGCAGCTGTCTGCGGACCGCCACAGCTGCCAAG
Seq C2 exon
ACACTGATGAATGCCTTGGGACCCCCTGCCAGCAGAGATGTAAAAACAGCATTGGCAGCTACAGGTGTTCCTGTAGAACTGGCTTCCATCTCCATGGAAACCGGCACTCCTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGGAATATGGCTGTGAC
R:
CAGGAGTGCCGGTTTCCATG
Band lengths:
226-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]