MmuEX6031535 @ mm10
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10638052-10644263:+
Coord C1 exon
chr19:10638052-10638180
Coord A exon
chr19:10641626-10641742
Coord C2 exon
chr19:10644147-10644263
Length
117 bp
Sequences
Splice sites
3' ss Seq
AAAGAGTTTTCTTTTCCCAGACA
3' ss Score
4.09
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG
Seq A exon
ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG
Seq C2 exon
ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'4-7,'4-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCATGGATCCTGCGG
R:
TATACAGGAGTGTCGGTTGCC
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types