BtaEX6103259 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43689183-43689933:-
Coord C1 exon
chr29:43689853-43689933
Coord A exon
chr29:43689463-43689554
Coord C2 exon
chr29:43689183-43689362
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCAGTGACAATTCCTGGCAGAGA
3' ss Score
3.27
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AGGCTCTGCAGACCCCCTCGGACCATCGGGAGCTGGAGCAGCTGCGGAAGGAAATGCAGACTCTACAGGACAGGCTGTCAG
Seq A exon
AGACGCTGGGGGACAGCAAGGCAGACGGGTGTCCGGCTGGCAGCCTGGGCCAGGACAGTGACCTGCGGCAGGAGAGAGACCAGCTCCTCCAG
Seq C2 exon
GAGCTGGCCGAGGCTCGGGCGGGGCAGCAGGCACAGGCGCGGGAACTTCGTGAGGCCAAGGGGCGGCAGGAGGAGCTGCTCCGGAAGCTGCAGGAGGCCCAGGAGAGAGAGGCGGCCATGGCCAACCAGACCCAAGCCCTGAACTCCCAGCTGGAGGAAGCCCACGATGCCCAGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-'12-17,'12-15,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGAAGGAAATGCAGACTC
R:
CTTGGGTCTGGTTGGCCATG
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]