RnoEX6006297 @ rn6
Exon Skipping
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221680674-221681334:+
Coord C1 exon
chr1:221680674-221680754
Coord A exon
chr1:221680953-221681059
Coord C2 exon
chr1:221681155-221681334
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCAATGACTATTTCCAACAGAGA
3' ss Score
5.42
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGGCCCTGCATAGCTCATTACAACCCCAGGAGCTGGTGCGACTGCAGAAAGAAGTACAGGTTCTTCAGGAGAAACTGACAG
Seq A exon
AGACACTGAGGGACAGCAAGGCCTCACTCTCACAGGCTGATGGCCTCCATGTTAGAAGCCCAGCCCCAGACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG
Seq C2 exon
GAGCTGGCTGAAGCTCAGGCAGCATTGCAAGTGCGGGATGCTGAACTGTGCCAAGCCCAGAACCGACAGGAAGAATTCCTACAGAGGCTGTGGGAAGCCCAAGAGAGAGAGGCAGCTGCAGCCAGTCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-'17-16,'17-14,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.806 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATTACAACCCCAGGAGC
R:
CTCTCTCCGGACAACCCAGG
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]