BtaEX6103280 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43680539-43681116:-
Coord C1 exon
chr29:43680996-43681116
Coord A exon
chr29:43680746-43680869
Coord C2 exon
chr29:43680539-43680624
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTCGCGCTGTCCCCTAACAGGCT
3' ss Score
9.21
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GGAGATGCTGAGGGACCCTTTCGTGCGCTCCAAGCTCATCTCAACACCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTGCTGACGGGAGACCCAGCGCCAGGGACCTGCCCCCGGTG
Seq A exon
GCTGCGGAAGTGAAGGGACGAGGTGCCCGCGGCTCTGGCCCGCAGCGGCCCCACAGCTTCTCCGAGGCCTCGCGGCGCCCAGTCTCCATGGGCAGTGACGGCCTCGCTAAAGATGCAGACCCCA
Seq C2 exon
TGAAGAGGAAGCCTTGGACATCTCTGTCCAGCGAGTCTGTGTCCTGCCCCCAGGGATCTCTGAGCCCTGCAGTCTCCCTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-'42-48,'42-46,43-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=65.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTGAGGGACCCTTT
R:
AGACTGCAGGGCTCAGAGATC
Band lengths:
196-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]