RnoEX6006280 @ rn6
Exon Skipping
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221690251-221690892:+
Coord C1 exon
chr1:221690251-221690368
Coord A exon
chr1:221690567-221690690
Coord C2 exon
chr1:221690807-221690892
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTCCTCACTGTCCCTGACAGGCT
3' ss Score
8.22
5' ss Seq
CCCGTAAGG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCACCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACAGAGGGCAGGCCCGGCCCCAGGGATGGGACCCGG
Seq A exon
GCTCAGGAACAGAAGAGCAGAGGCACCCGCAGCTCCGGACCGCAGCGGCCCCACAGCTTCTCAGAGGCATTGCGGCGTCCAGTATCCATGGGCAATGATGGCCTCCCTGGAGAAACAGACCCCC
Seq C2 exon
TGAAGAGGAAAGTTTGGACATCTCTGTCCAGCGAATCCGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-'42-44,'42-42,43-44=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=1.000 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTGAAGGACCCTTT
R:
CTGTATCAGGGATGCTGCAGG
Band lengths:
204-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]