BtaEX6104010 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46521128-46531873:+
Coord C1 exon
chr29:46521128-46521524
Coord A exon
chr29:46523296-46523467
Coord C2 exon
chr29:46531657-46531873
Length
172 bp
Sequences
Splice sites
3' ss Seq
GACGTGTGCTTCTTCTCCAGCCT
3' ss Score
7.48
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGGCAGAGGAGGTGCTGCTGCTGGCCCGGCGGACGGACCTGCGGAGGATCTCGCTGGACACGCCGGACTTCACGGACATCGTGCTGCAGGTGGACGACATCCGGCACGCCATCGCCATTGACTACGACCCGCTGGAGGGCTACGTCTACTGGACGGACGACGAGGTGCGGGCCATCCGCAGGGCATACCTGGACGGGTCGGGGGCACAGACGCTGGTCAACACCGAGATCAACGACCCTGACGGCATCGCGGTCGACTGGGTGGCCCGCAACCTCTATTGGACTGACACCGGCACCGACCGCATCGAGGTGACGCGCCTCAATGGCACCTCCCGCAAGATCCTGGTGTCCGAGGACCTGGACGAGCCCCGTGCCATCGTGCTGCACCCCGTGATGGG
Seq A exon
CCTCATGTACTGGACAGACTGGGGGGAAAACCCAAAAATCGAGTGCGCCAACCTGGACGGGCAGGAGCGGCACATTCTGGTCAATACCTCCCTGGGCTGGCCCAACGGCCTGGCGCTCGACCTGCAGGAGGGCAAGCTCTACTGGGGAGACGCCAAGACGGACAAAATTGAG
Seq C2 exon
GTGATCGATGTCGACGGGACCAAGCGGCGGACCCTCCTGGAGGACAAGCTCCCGCACATTTTCGGATTCACGCTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGCGGCGTAGCATTGAGCGTGTGCACAAGGTCAAGGCCAGCAGGGACGTCATCATCGACCAGCTGCCCGACCTAATGGGGCTCAAGGCCGCGAATGTGGCCAAGGTCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903-'8-13,'8-10,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
C2:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTGGACTGACACCGGCAC
R:
TTGTGCACACGCTCAATGCTA
Band lengths:
257-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]