GgaEX1033965 @ galGal4
Exon Skipping
Gene
ENSGALG00000006998 | LRP5
Description
low-density lipoprotein receptor-related protein 5 precursor [Source:RefSeq peptide;Acc:NP_001012915]
Coordinates
chr5:15761906-15767146:+
Coord C1 exon
chr5:15761906-15762302
Coord A exon
chr5:15762969-15763140
Coord C2 exon
chr5:15767046-15767146
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTGTTTTCTTTACAGCTA
3' ss Score
11.62
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGCTGAAGAAGTGTTGCTGCTTGCTAGGAGGACTGACTTGAGAAGGATTTCCTTGGACATGCCAGATTTCACTGACATTATTCTGCAGATAGACAATATCAGGCATGCAATTGCCATAGACTATGATCCTGTGGAAGGCTACATCTACTGGACTGATGATGATGTTCGGGCAATTCGTCGGGCGTACCTTGATGGCTCTGGAGCACAGACTCTGGTAACCACAGAAATCAACCATCCAGATGGTATTGCTGTGGACTGGGTGGCAAGGAACCTGTACTGGACTGATACTGGAACAGACCGCATTGAAGTGACCCGTTTGAATGGAACATCAAGAAAGATCCTTATATCAGAAAATCTGGATGAACCTCGTGCAATTGTGCTCAATCCTGTGATGGG
Seq A exon
CTACATGTATTGGACAGACTGGGGTGAAAGTCCAAAGATAGAATGTGCTTATTTGGATGGATCAGAGAGGAGAGTTCTGGTGAATACGTCCCTGGGTTGGCCTAACGGCTTGGCACTGGATCTTGAAGAGGACAAACTTTACTGGGGAGATGCCAAAACAGATAAAATTGAG
Seq C2 exon
ATCTGCAGGAAGGCCTCCTTGTGTCCCAACTTCTTAAAGTGACTCAACTTCGCACAGCTTGGAAAATTGATAAGCCCAGGGCATCTGTTCTGCTTTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998-'9-10,'9-9,10-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTGCTGTGGACTGGGTGG
R:
GCAAAAGCAGAACAGATGCCC
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]