BtaEX6104539 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X750]
Coordinates
chr29:51438767-51439992:-
Coord C1 exon
chr29:51439742-51439992
Coord A exon
chr29:51439442-51439625
Coord C2 exon
chr29:51438767-51438995
Length
184 bp
Sequences
Splice sites
3' ss Seq
TCCTCACGGGTCACGTCCAGATC
3' ss Score
3.69
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCGTGTGCAGCGGCTGGGGGGACCCACACTACATCACGTTCGACGGCACCTACTACACGTTCCTGGACAACTGCACATACGTGCTGGTGCAGCAGATCGTGCCGGTGTTCGGCCACTTCCGCGTGCTGGTCGAGAACTACTTCTGCGATGCAGAGGATGGGCTGTCCTGCCCACAGTCCATCATCGTTGAGTACCATGAGAACCGCGTCATGCTGACCCGCAAGCCCGTCCACGGGGTGATGACCAATGAG
Seq A exon
ATCATCTTTAATGGCGAGGTGGTAAGGCCCGGCTTCCAGAAAGGCGGCATTGCTGTCTTCCAAGTTGGCATCAAGATGTACGTGAGCATTCCCAAGCTCGGTGTTCAGGTCATGTTCAGCGGCCTCATCTTTTCCGTGGAAGTGCCCTTCAGCAAGTTCGCCAACAACACGGAAGGGCAGTGTG
Seq C2 exon
GCACCTGCACGAACGACCAGAAGGACGAGTGCCGTCTGCCCGGGGGCACGGTGGTGGCCTCCTGCTCCGACATGTCTGGCCACTGGAAGGTGACATACCCCGGCCAGCCGTCCTGCCACGGGCCTCCCCCAACGTCAGGGGAGCCCGGCACCTCGCCCACCCCACGGGAGCCTGGCACCTTGCCCACCCCGTGCCCACCTTCGCCGATCTGCCAGCTCATTCTGAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038262-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.273
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.6=96.4)
A:
PF0009420=VWD=FE(38.1=100)
C2:
PF0009420=VWD=PD(10.0=20.8),PF087426=C8=PU(17.6=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGGTGATGACCAATGAG
R:
CAGAATGAGCTGGCAGATCGG
Band lengths:
245-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]