Special

MmuEX6015369 @ mm9

Exon Skipping

Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:148998129-148999115:+
Coord C1 exon
chr7:148998129-148998379
Coord A exon
chr7:148998472-148998655
Coord C2 exon
chr7:148998914-148999115
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCTGTGTGTATCCAGATC
3' ss Score
9.14
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTGTTTGCAGCGGGTGGGGTGATCCCCACTACATCACATTTGATGGCACCTACTACACTTTCCTGGATAACTGCACATACGTGCTGGTGCAGCAGATCGTGCCCGTGTTTGGATACTTCCGTGTGCTCATTGACAACTACTACTGTGACGTGGGAGACAGCGTCTCCTGCCCACAGTCCATCATTGTGGAGTACCACCAGGACCGTGTGGTGCTGACCCGCAGGCCAGTTAGCGGGGTCATGACCAACCAG
Seq A exon
ATCATCTTCAACAACAAAGTAGTCAGTCCTGGCTTCCAGCAGAATGGCATTGTCACCTCCCGTGTGGGTATCAAGATGTATGTTACCATCCAAGAGATTGGTGTCCGGGTCATGTTTTCAGGTCTCATCTTCTCCGTCGAGGTGCCTTTCAACTTGTTTGCCAACAACACAGAGGGCCAGTGCG
Seq C2 exon
GCACTTGCACCAATGACAAAAAGGATGAGTGCCGCCTGCCTGGGGGTTCCATAGCCTCCTCTTGTTCTGAGATGTCCCTCCACTGGAAGGTGCCCAACCAGCCTTCCTGCCAAGGGCCTCCACCAACTCCAACTTCAGTGGTACCCAGGCCTTCACCTACTCCGTGCCCACCATCGCCACTCTGTGAGCTCATCCTAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-'41-42,'41-41,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.147
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0009420=VWD=PU(50.6=96.4)

							
A:
PF0009420=VWD=FE(38.1=100)

							
C2:
PF0009420=VWD=PD(10.0=23.5),PF087426=C8=PU(17.6=19.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000039699





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000115806, ENSMUSP00000128536, ENSMUSP00000131681
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr11:1194487-1194670 
HIGH PSI
HsaEX7005751
(MUC5AC)
Human
(hg19)
chr11:1215713-1215896 
Rat
(rn6)
chr1:214749983-214750166 
RnoEX6005670
(AABR07006033.1)
Cow
(bosTau6)
chr29:51439442-51439625 
BtaEX6104539
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr5:15860024-15860207 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGCCCACAGTCCATCATTGTG

				
R: 
AGTAGGTGAAGGCCTGGGTAC

				
Band lengths: 
245-429

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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