HsaEX7005751 @ hg38
Exon Skipping
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1194110-1195279:+
Coord C1 exon
chr11:1194110-1194360
Coord A exon
chr11:1194487-1194670
Coord C2 exon
chr11:1195012-1195279
Length
184 bp
Sequences
Splice sites
3' ss Seq
CGACCACGCCCTGCGTCCAGATC
3' ss Score
5.97
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGTGTGCAGCGGCTGGGGTGACCCCCACTACATCACCTTCGACGGCACCTACTACACCTTCCTGGACAACTGCACGTACGTGCTGGTGCAGCAGATTGTGCCCGTGTATGGCCACTTCCGCGTGCTCGTCGACAACTACTTCTGCGGTGCGGAGGACGGGCTCTCCTGCCCGAGGTCCATCATCCTGGAGTACCACCAGGACCGCGTGGTGCTGACCCGCAAGCCAGTCCACGGGGTGATGACAAACGAG
Seq A exon
ATCATCTTCAACAACAAGGTGGTCAGCCCCGGCTTCCGGAAAAACGGCATCGTGGTCTCGCGCATCGGCGTCAAGATGTACGCGACCATCCCGGAGCTGGGAGTCCAGGTCATGTTCTCCGGCCTCATCTTCTCCGTGGAGGTGCCCTTCAGCAAGTTTGCCAACAACACCGAGGGCCAGTGCG
Seq C2 exon
GCACTTGCACCAACGACAGGAAGGATGAGTGCCGCACGCCTAGGGGGACGGTGGTCGCTTCCTGCTCCGAGATGTCCGGCCTCTGGAACGTGAGCATACCCGACCAGCCAGCCTGCCACCGGCCTCACCCGACGCCCACCACGGTCGGGCCCACCACAGTTGGGTCTACCACGGTCGGGCCCACCACAGTTGGGTCTACCACGGTCGGGCCCACCACACCGCCTGCTCCGTGCCTGCCATCACCCATCTGCCAGCTGATTCTGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182-'36-45,'36-43,37-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.6=96.4)
A:
PF0009420=VWD=FE(38.1=100)
C2:
PF0009420=VWD=PD(10.0=17.8),PF087426=C8=PU(16.4=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATCACCTTCGACGGCAC
R:
CTTCCTGTCGTTGGTGCAAGT
Band lengths:
246-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains