BtaEX6106614 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15331545-15338975:+
Coord C1 exon
chr27:15331545-15331704
Coord A exon
chr27:15333209-15333318
Coord C2 exon
chr27:15338816-15338975
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTTTTTCACATTCAGGAA
3' ss Score
10.96
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
CTTGCCACCGAAGCATTTATAAAGGAATCGATATGAGAGGAGTCAATTTCAATGCATCTAAGGTGAGAAGTGCCAAAGAATGCCAAGAAAGGTGCACCAACAACATTCACTGCCAGTTCTTCACATATGCCACGAAAACCTTCTTCAGTGCAGAGTACCG
Seq A exon
GAACACCTGCCTATTAAAACGGAGCCCACAGGGGACACCCACGCGTATAAAGGTGCTGAGTGATGTGGAGTCTGGATTCTCACTGAAGGCCTGTGGAAACTCGAAAATTG
Seq C2 exon
GCTGCCGCGTGGACATTTTCCAACACAGTGCGTTTTCAGATGTGGATGTTGCCGGAATTATCGCACCAGATGCTTTTGTGTGTCGAACCATCTGCACCTATCACCCCAGCTGTCTTTTCTTCACATTCTATACAAATGCATGGAAGACAGACTCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
PF0002421=PAN_1=PD(36.9=81.6)
C2:
PF0002421=PAN_1=PU(61.9=96.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAAGAAAGGTGCACCA
R:
CTCTGTGAGTCTGTCTTCCATGC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]