GgaEX0020210 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr4:60988757-60992735:+
Coord C1 exon
chr4:60988757-60988916
Coord A exon
chr4:60989502-60989611
Coord C2 exon
chr4:60992576-60992735
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTTTATTCTTTATCACTCAGTGA
3' ss Score
6.27
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
CTTGCAGTCCAGATGTCTACGTAGGATTGGATATGCAAGGGGTAAATTATGACGTTAGTGTGGCTGACAGCTATCAACAGTGCCAAAAAAGATGCACCAATGACAAACGCTGTCATTTTTTTACATACGCCCCAGGAACATATCACGATGCAAGCTTTCG
Seq A exon
TGAAAAATGCTTCTTGAAACATACCAGTTTAGGAACTCCAACCAGCATAAGGGTGCTTGATGAGGTTGTGTCTGGATTCTCCTTAAAGCCATGTCAGCTTTCTGAATTAG
Seq C2 exon
ATTGTCAAATGGACATTTTTGAACACGAAGAATTTTCAGGAACGAATGTCACAAGTTTTTTCACTCCAGACACTTTTGCCTGCCAAACTATTTGTACTTATTTTCCAAACTGCTTGTTCTTTACATTCTTCACCAAGGAATGGCAAATAGAATCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
PF0002421=PAN_1=PD(36.9=81.6)
C2:
PF0002421=PAN_1=PU(61.9=96.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTCCAGATGTCTACGT
R:
GCAGGCAAAAGTGTCTGGAGT
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]