MmuEX6035492 @ mm9
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:46334859-46337531:-
Coord C1 exon
chr8:46337372-46337531
Coord A exon
chr8:46335411-46335520
Coord C2 exon
chr8:46334859-46335018
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTGTTTGTATTCAGTAA
3' ss Score
7.04
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
CTTGCAGCAAAGATGTGTACGTGAACCTAGACATGAAGGGCATGAACTATAACAGCTCTGTCGTGAAGAATGCTCGAGAATGCCAGGAGAGATGCACAGACGATGCCCACTGCCAGTTTTTCACATACGCAACAGGGTATTTTCCCAGTGTGGACCATCG
Seq A exon
TAAAATGTGTCTTTTGAAGTACACCCGAACGGGGACGCCAACCACAATAACGAAGCTCAATGGCGTGGTATCTGGATTTTCACTGAAGTCCTGTGGACTTTCAAACTTGG
Seq C2 exon
CTTGTATCAGGGACATTTTCCCTAACACGGTGCTGGCAGACCTTAACATTGACAGCGTGGTGGCCCCAGATGCTTTTGTCTGTCGTCGCATCTGCACGCATCACCCCACTTGTTTGTTCTTCACATTCTTTTCCCAAGCATGGCCGAAAGAATCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
PF0002421=PAN_1=PD(36.9=81.6)
C2:
PF0002421=PAN_1=PU(61.9=96.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCGAGAATGCCAGGAGA
R:
ATTCTTTCGGCCATGCTTGGG
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: