RnoEX0033740 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50192301-50194827:+
Coord C1 exon
chr16:50192301-50192460
Coord A exon
chr16:50194238-50194347
Coord C2 exon
chr16:50194668-50194827
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCATTTCTGTTTTTATTCAGTAA
3' ss Score
7.07
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
CTTGCAGCAAAAACGTGTACGTGAACCTGGACATGAAGGGCATGAACTATAACAGTTCTGCCGTGAAGAATGCTCGAGAATGTCAGGAGAGATGCACCAACGATGCCCACTGCCAGTTTTTCACATACGCAACGGGGCATTTTCCCAGTGTGGACCATCG
Seq A exon
TAAAATGTGTCTTTTGAAGTACACCCAAATGGGGACGCCAACTTCAATAACAAAGCTCGACAGTGTGGTATCTGGATTTTCACTGAAGTCCTGTGGGCTTTCGAACCTGG
Seq C2 exon
CTTGTATCAGGGACATTTTCCCGAACACCGTGCTTGCAGACCTTAACATTGACAGCGTGTTGGCCCCAGATGCTTTTGTCTGTCGTCGCATTTGCACGCATCACCCCACGTGCCTGTTTTTTACATTCTTTACCCAAGCGTGGCCAAAAGAATCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
PF0002421=PAN_1=PD(36.9=81.6)
C2:
PF0002421=PAN_1=PU(61.9=96.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGAAGAATGCTCGAGAA
R:
GGCCACGCTTGGGTAAAGAAT
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]