BtaEX6107259 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014056 | CHRNA6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MQ06]
Coordinates
chr27:37195913-37199526:-
Coord C1 exon
chr27:37199417-37199526
Coord A exon
chr27:37198339-37199317
Coord C2 exon
chr27:37195913-37196044
Length
979 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGATTTACTTTGCAGTGC
3' ss Score
8.37
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATCTGGAATGATTATAAACTGCGTTGGGACCCCACGGAATATGACGGCATTGAGACTCTCCGTGTTCCTGCCGAGATGATCTGGAAGCCCGACATCGTTCTCTACAACAA
Seq A exon
TGCGGTCGGCGACTTCCAAGTCAAAGGCAAGACAAAAGCTCTTCTTAAATACGATGGCATGATAACCTGGACTCCACCAGCGATTTTTAAGAGTTCCTGTCCAATGGACATCACTTTTTTCCCTTTTGACCATCAAAATTGTTCCCTGAAATTTGGTTCCTGGACTTACGACAAAGCTGAAATTGACCTTCTAATCATTGGCTCTAAAGTGGACATGAATGAGTTTTGGGAGAACAGCGAGTGGGAAATTGTCGACGCTTCTGGCTACAAGCATGACATAAAGTACAACTGTTGTGAAGAGATATACACAGACATCACCTACTCTTTCTACATCAGGAGGCTCCCAATGTTTTACACCATTAATCTGATCATCCCCTGCCTCTTTATCTCGTTCCTCACTGTCTTGGTCTTCTACCTCCCTTCTGACTGTGGTGAAAAGGTGACTCTTTGCATTTCAGTGCTGCTTTCTCTGACTGTGTTTTTGCTGGTGATCACAGAAACCATCCCGTCCACGTCTCTCGTGATCCCCCTGGTGGGCGAATACCTGCTCTTCACCATGATCTTCGTCACCCTGTCCATCGTGGTCACGGTGTTTGTGCTGAACATCCACTATCGTACCCCGACCACTCACAGCATGCCCACGTGGGTGAAGGCGGTCTTCCTCCGGCTGTTACCCCAGATGCTGATGATGAAGAGGCCTCTGGACAAGATGAAGGAGACAGGAGCTCATAGAAACCCCAAAGGAGTCTCCAGTAGGCCTGCCAAAGTCAAGTTTGAGCATCACAAAGAGCCCAGACTTCTTAAAGAATGCTGCCACTGTCATAGATCTGGTGAGCCTGCCACCAGCAAGAGACGATTAAGTCATCAGCCTTTACAGTGGATGGCTGAAAATTCGGAGCTCTCGCCTGAAGTCGAAGATGTAATCGATAGTGTTCATTTCATAGCGGAAAACATGAAGACCCAAAATGAAACAAAGGAG
Seq C2 exon
GTAGAGGACGACTGGAAATACGTGGCCATGGTGGTGGACAGGGTGTTCCTGTGGGTGTTTATAATCGTCTGTGTGTTTGGAACTGCAGGGCTGTTTCTCCAGCCGCTCCTGGGGAACACAGGGCATTCGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014056-'5-4,'5-3,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.4=100)
A:
PF0293118=Neur_chan_LBD=PD(55.6=35.2),PF0293211=Neur_chan_memb=PU(86.1=62.4)
C2:
PF0293211=Neur_chan_memb=PD(13.1=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATGATTATAAACTGCGTTGGG
R:
TTACGAATGCCCTGTGTTCCC
Band lengths:
239-1218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]