BtaEX6108163 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2754265-2758489:+
Coord C1 exon
chr25:2754265-2754356
Coord A exon
chr25:2754633-2754759
Coord C2 exon
chr25:2758379-2758489
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAGCCCATTCTCTTCTTTAGAGC
3' ss Score
5.7
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
TGGGGCCTGCTCACCGGATCCTAGCCTTTCCTGAGCAGACAGACACCAAAGACTGGACAGTGGCACCTGAGCTTGTCTTGCCTGAGTCCCAG
Seq A exon
AGCTTATTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTACTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAAGAAAACTATGAGACTGTCATCTCTCTAG
Seq C2 exon
CATTATTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGAGAAGAGCCATGGGTTCAAAGACCCCTGGAGTTCAAGGACAGTTCTGAAGAGCTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381-'6-7,'6-4,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCGGATCCTAGCCTTT
R:
CTGCAGGCAGCTCTTCAGAAC
Band lengths:
195-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]