HsaEX0074299 @ hg19
Exon Skipping
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:13146]
Coordinates
chr16:3362677-3367022:+
Coord C1 exon
chr16:3362677-3362768
Coord A exon
chr16:3363049-3363175
Coord C2 exon
chr16:3366912-3367022
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAGTCCATTCTCTTCTTTAGAGC
3' ss Score
5.94
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
CTGTGCCTACTCAACAGATTCTAGCTTTTCCTGAGCAAACAAACACCAAAGACTGGACAGTGACACCTGAGCACGTCTTGCCTGAGTCCCAG
Seq A exon
AGCTTGTTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTATTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAGGAAAACTATGAGACTGTCATCTCTCTAG
Seq C2 exon
CATTGTTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGGGAAGAGCCATGGGTTCAAGTATCCCCGGAGTTTAAGGATAGTGCCGGAAAATCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086_MULTIEX1-4/5=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCTACTCAACAGATTCTAGC
R:
GGAGATTTTCCGGCACTATCCT
Band lengths:
197-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)