HsaINT0188289 @ hg19
Intron Retention
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:13146]
Coordinates
chr16:3363049-3367022:+
Coord C1 exon
chr16:3363049-3363175
Coord A exon
chr16:3363176-3366911
Coord C2 exon
chr16:3366912-3367022
Length
3736 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TCATTTTGTCCATTTGACAGCAT
3' ss Score
4.81
Exon sequences
Seq C1 exon
AGCTTGTTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTATTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAGGAAAACTATGAGACTGTCATCTCTCTAG
Seq A exon
GTAAAGATTTTCCCTTCCCTTTATGTAGTTGAGTACTCTATTCTTGGCTTACTGAGAAGGAACCCCAGTGAGGGGTGTCTTACTGTTCCAGGAGCTGGTTGATTCTCATCTAGATGGTATAGGGGAGGGTGTAGGTAGTGTATCCAGATCACCTGTGGAGCTTTTTCCAAATGTACATGCCGATTGCTTATCCCACATTGAGTCCTTTATCCTTTCCTTCTCTTTTCCACCAAACTTCCTCTTCTGTGTCTTACTTATCTCAGTAAGGGGCACATTCATTATCCAGTGGCTCAAGGCATACAAAGTAACAGTTTTCCTTTATTCTGATCTTGTCATCATACCCCACTGTTAATTCATTAGCAAGTTTTCTTAGCTTTACTTTGACATATCCTGACTGCAACAATGTCTCATCTTCTTGCACTGTTAGCATCCTGGTGTAAGCCAGTGTCATCTTGAACCAGGCATACATGCGTAGCTTTTTAACAGGTGCGCCTGCATCTCCTTGTGCCCTTCCACAGTCTGTTTTCTATACAGAAGCTAGATTGATCTTTTAAAAACCTAATCAGATCATGACATTTCCTTTCCTCAAAAGCATGTGGTCACTTACATTCAGAAAAAAAAGTCTGATATTACCAGGGCTCCAGGACACTCTACAGTCTGGTTCCTGCTCATCTGTCTGCCCTCATTTGCTACTGAAGCCCTTGCTCAGTCCTCACCAGCCACTTAGCTAGTCTCCTTGCTGTTAATTGAATTTGTCAAGTTCATTTTTACCCTCTTGTTTCATTTTATTTGGCACACTGGGCTTCCTGAATACTTCATTTTCAAATTGAGTACATCTAAGTTTTGCTCAACTCAGAAAAATGTATATCATGCAAGGGGAAAAAACGCTATATATATATATCTTTTTATTAACTTTCCTCTTGAAAACTGAGGATAATCATCTGGGGAACCGGTTCTAGGGGCTGGTAGACACTTGGTTCTAATTTACAAAGAACCAAGTGGTTACCATACACACTCTTAAAAAGGTGTCCTATCTTTCCAGAAAGAATCAGGATTTTCTGTATTTTAGAAATGAGCTAAGGATGATCATAGAAACAAGAGAAATATCCTCTGGCTCTTTTCCACCCACAGCTGTGCCTGCTCAACAGATTTTAGTCTTTCCTGAGCAGACAAACACCAAAGACTGGACAGTGGCACCTGAGCTCCTCTTGCCTCAGTCCCAGTTGAGCTGTGCTTTCCAGCAGTGTAGGGCTACCTGAGCATGACCTTATCTGCCTTTCCCTGCTGCCCAAGACCCACACTGCCCAGCATGTGCCCTGAGGCATGTTAGCCCCAGAGGTTCTACCCTGGACAATTAGGCTTGGCCCAGAGGGAACTGGGTACCTCCTAGGCTGTTTGCTGATCCCTTGGCTCCTTTTCTTCTGCCTTCGCCCCCGTGGGCCCCCGCCTTTTTTTTTCTTAAATCGTATTCTGTTAATTTCTTTAGCACCTGGCCTACCATGCAGTTCATACGCAGTTAGGCTGCTTCTGCAGTGGCAAGTTCAGAGCTGAAGTCCATTCTCTTCTTTAGAGCTTGTTGACATTTGAAGAAGTGGCCATATATTTTTCTCAGGAAGAATTGGAGTTACTGGATTACACTCAGAAGGCCCTCTACAATGATGTAATGCAGGAAAACTGTAAGACTGTCATTTGTCTAGGTAAAGATTCTCCCTTCTTTTTGTGTAGAAGTTGAGCAATCTGTTCTCAGTTTACTGAGAATGAACCTCTGTGAGAGGGTCTCAGTGTTCCAGGAGCTGGTTGATTCTCAACTAGATAGTGTAGCGGAGGGTGTAGGTGGTGTATCCAGATCACCTGGGGAGCTTTTCCAGATGTACGTGCTCATTCCTTGTCCTACGTGGAGATCTTGATCCCTTCCCTTTCCCTTTCCCCAAACCTTCTCCATCATGTTTTTCCCATCTCAGTAAGGGGCATCAGCATTATCCAGTTGCTCAGGGCAAACAAAGTACTGTCATGTTTTTTTTTTTTTTTTTTTTTGAGATGGAGCCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCAGTGCAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCGTCAGCCTCCCAAGTAGCTGAGACTACAGGTGCCCGCCACCATGCCCAGCTAATTTTTTTTGTATTTTTTTAGTAGAGATAGGGTTTCATCATGTTAACCAGGATGGTCTCCATCTCCTGACCTTGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCCAGCTAGTACTGTCATCTTTTACCCTGATCTTGCCATCATACCCCACTGTTAATTCATTAGCAAGTTTTCTTAGCTCTACTTTGACATATCCTGACTGCAACCATGTTTCAGCCCCTTGCACTGCCAGCATCCTGATCTAAGCCAGTGTCATCTTGAAGCAGATCAATGTCAGTAGCTTTCTAACAGGTCCCCCTGCCTTCGCTCTTGTCCTCCCACAGTCTGTTTTCTACACAGAACCCCAACTGATTTTTTGAAAACCTGATCAGATCGTTGCATTTCCTTGTTTCAGAAGCCTGTGGTTACTTCCTAACCATATTTGGAGAAAAATCTAAACTTCTTACCAAGGCCTCAGGACCCTCCATGGTCTGGCTCCTATGGAGTTCTTTGCACATGTGTCCTGCTACTGGTGCGCTTGTGCACTCAGTCCTTAGCCACACTGGTTGTCTTTCTGTTACTTGAACTCGCCAGGCTCATTTCTACTTTTCCTTTGCCTTGCATACTTTTCTGCCATGTGACAAAACTCACTTTTAGGTTTCTGCTCAAGTATTACTTTCTCAAAGAGGTGTCCCACAAGACCTTATCTAAAATAGCTTTACAGGAGCAGAATCTTAAATACTCTTTACCGTGATTTAATTTTCTTTAAAACATTTATCACTCCCTGACATTATTTTGTTTATTGATTGATTGTGCCATCCCTCTACTGTAATGTAAAGTCCGTGAAATCAGGGGTCTTCTTCACTACTATATCCCTAGCCCTCGAGCAGTGCCTAACACACCATAGCCACTCAATACATGTTTGTTGAATGAATGAGTGAGAGAGTTTCATACCTTGTAATCCGTAATTAGAGAAACTTCACCAAGTGATTTTGGTCTATTTCTTCTACCTGCATATGAACCAGTAATCTATAGGAATGGTAGAAATCTATCCTAGTTGAGGGCCAGTGGCTAAGGAATAAAGGCTAAATAAAAAGTAGCTGTAATTATAATAGTAATCACTTGTGCTTATGATACTCAAGTCAGCGTCCTTCACATTGGCTTTGCCATACCTGGTCTTATCCAGGCTGAGTCCTTCTGAAGAGTTAATAAGACCAGCTTATATTCCCTGCAACTTCTGGAGCTTGGTTCCCCCTTGGTTGGATATAGGGTATTGATGGCAAAAGAGAGAGAACATGTACTGGATTCCCATTCCCTATATCCTTTTCATTGATCCACCGTAGATTTATTTCTTAGTCTCTGCTTTGCATAGCTACCTATAAGTATAACATAGTATAAACGTGATACTTAATCTTGGAGTCTATCCATTTAACCATTTGGAGTAACAAATTGTAAAATGTCTTTGGTCATCCTGAAACAGTCTGGGATTAGTGGACCAGTTCACTGTTAAGTTACCAGTCCTTGACCTCATTTTGTCCATTTGACAG
Seq C2 exon
CATTGTTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGGGAAGAGCCATGGGTTCAAGTATCCCCGGAGTTTAAGGATAGTGCCGGAAAATCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086-ZNF75A:NM_153028:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)