BtaINT0166041 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2754633-2758489:+
Coord C1 exon
chr25:2754633-2754759
Coord A exon
chr25:2754760-2758378
Coord C2 exon
chr25:2758379-2758489
Length
3619 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TCAGTTTTTCTGTTTCACAGCAT
3' ss Score
7.91
Exon sequences
Seq C1 exon
AGCTTATTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTACTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAAGAAAACTATGAGACTGTCATCTCTCTAG
Seq A exon
GTAAAGTTTCTTTTTCCCCTTCCCTTTGCACAGCAGTGGACTAATCTGTCCTGTTTTGGGGGGTACTGAGAATGCACCCTTGTGAGAGTCTGTTCTAGTAGCTGACTGGTTCTCAACTAGATGGTGTGGGCAGGGAAAAGGTACACCAGATCACCAGCAAGCTTTTAACACGTGTACATACTCATTCCTTATCCTAAATCTTGATCCTTCTCTTTTTCCCTCAAAATCGCTCTTCTCTTATCTTTCCTTCACCCAGTATTTTAGGCTAGAAAACTTGTGGTCATCCTTTGCACCAATCTGTTCCAACCCCGGTAGTACTAATGCATCACTAGTTCTCTTGGCTCTACCTTCCCGTGTGGCCTGAGTCCAACCAAGTCTCAGCCTCCTGTGCTTTAGCATTGTGGTGTAAGCAGCGGCAGTCTCTAATAATGTCCACCTCCATACTTGGCACCCCCTGCCAGCATTCCTCCCTGCCTGCAGTCTGTTCACACAGCAGCCAGAATCCTTTAAAAAACCAGTTCATATCAGAACATGGCTCAACATCAAAGCCTTACCGTGATTTTTCACACATTCAAAATAAATCCAAACTCCTTATAGAGTCACCCAGGAACCCCCAAGTTCTGGCCCCGCTTCACTTTCCTCCCCTAGTCTGCCACTCCTGCCCTGCTCAGTCTTCTTTAGCCACACTGGTCTTGCTGTTTCTTGAACTCACCAAACTCATTCCGACCTTTGGGTTTTCTGTACCTGGCACATTGGACTCCGTACTGCATTGTACAACACCTCTAAGTTTTGTCCAACTCTGAAGAATTCATGTCATGTAAAGAAAAAAAGATTTCCTTTTCTTAACTTCACTCGTGAAAACTGAAGAGTCAAGTGGGAAACCTGTCTTAGGGGCTAGTAGATGCTTGTTTAAAATGAGATAGCTACTTCTCGGTACCATGTAACACTTGTAAAGTTGTTCTATCTCAACTGAAAGAATCAGGATCTTCTATACTTTTGAATTAAGCCTAGGATGTTCAAAGATGGGAGGGAGAGAGATTTTCTTGTTCTTCCACAGCTGTGCCTGCTCACCAGCTCCTAGCCTTTCCTAAGCAGACAAATACCAGTGAGTGGACAGTGGCACCTGAGCTCATTCTGCCTGAGTCCCAGGTGAGCTGTACTTTTCAGCTTCTTGGGGCTGCCTCTCCCTGCTGCCCATGACCTGCCCTGCCCAGCAGGTGCTCAGAGGTGTCCCAGATGTTCCCCCTGGGGAACTGAGTACCTCCTGGGCTGTTTGCTGATCCCTTGCCTACTTTCTGCCATCTTGCTTTAAAATAATTCATGTGCTATTAGTTCCTTTAGTGACTGGCTTACCTTGTAGTTCATGGCTTAGAAGATTGGGCTGCTTCTGTAGTGGCAAGTACTGAGCTGAAGCCCATTCTCTTCTTTAGAGCTTGTTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTACTGGATCCCACTCAGAAGGCCCTCTACAATGACGTAATGCAAGAAAACTATGAGAGTGTCATCTTTCTAGGTAAAGTTTCTCCCCTTCACTTTGCCTAGGAGTGGACTAAACTGTCCTGTTGTTGGCATACTGAGGATGCACCCTTGTGAGAGAGTCTCTGTTCTAGTAGCTGACTGGTTCTCAATAAGATGGTGTAGGCAGGGATCACCAGATCACCAGGGAGCTTTTCCCCAGTACACATTCCTTATACTGTTGGAATTCTTGATCTCTTCTTCCATCTAAACTTGCCCTTACATCTTTCTCATTTCTGTAAAAGGCATCCCCATTCATCCACTTGCTCAGAGCAAGCAATGTCCAGTCACCCTTTACCTCGATCTGCTATAATACCCCACGAAGTCTAGCACTCTTGGTTCCACCTCACAGTGTAGCCTGAGTGTCACATCTCAGCTTCTTGTGCTCGTAGCATCCTGGTCTTAGGTAGCAGCATCTCTATCGAGGTTTACCTCAGTATGTTCTTCCTGGCACCCACTGCCTGCCCTCTCACAGTCTGTTTCCTATGTGGCAGCCAGAGTCTTTTAAAAACCTGACCAGATCATGACATTTTCTGCTTCAAACCTTACAATAACTTCTCATAACGTTCAGAATAAATCCAGGTTCCTTACCAAGACCCAGGACCCTCCAAGGTCTGGCCCTTCCTCATCAACCTGCTGTCGTCTCCTGCCACTTGTGCCCTTGCTCTGGACCCTCTAGTCACACTACTCATCTTGTTTCATGGACTTGATGTGCTCATTTCTTCCTCCTTCCCTCTGCCTGGCCCACATTTCTGCCTCATGACAAAATCCTCATTTTAGGGTTCTGCTCAGATGTTACTTAAGGAGACTTTTTATACAACTTTATATCTCAAGTAGCTTCACAGAAGCAGAATCTTAAAATGTTCTCTTACCCTCCCTTAGTTTTCTTCAAAACATGTATCACTTCCTGACATTTTATTTGCTCGTCTGTTGATGTTAGATTGTTTCACTCTGCACAAGAATATAAGCTTTTTGAGATCAGGGGACTTGATTTATTTAGCACTATGTCCCTGGCACATAGAGGGTGCCTGGTGCACCATAGCCACTCACTACATATTTATGGTATGACTGAGTGATGAATACTTTCCATACTTGGCAGTAAGATTTTGAGAAAGTCCACTAAGTAATTCTTGTCTGTTTCTTCCACCTGGATGTGAACCAGTGAGCTATAGGAGTGGTAGAAATCTTTTCTAGTCCAGTGTTTGGTGCTTGAGGACTAAATAAAAAGTTAGTTTTATTTAGTTATTTTGTTGAACTTTTACTAAATAAAAGTAATGATGGCATGTATCATTTATGCCTGATACTCCACCCACGGACCTTTGCATTGACTCCCCTGAACCTGGACTTATCTAGTTTAAGTCTTCCTGTTTTTCAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCCTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGCTGAAGCTGAACCTACAGTGCTTTGGCCACCTCATGTGAAGAGTTGACTCACTGGAAAAGACCCTAATGCTGGGAGGGATTGGGGGCGGGAGGAGAAGGGGACGACAGAAGATGAGATGGCTGGATGGCATCACTGACTCAATGGACATGAGTTTGGGTGAACTCTGGGAGTTGGTGACGGACAGGGAGGCCTGGCGTGCTGTGATTCACGGGGTCGCAAAGAGTCGGACACGACTGAGTGACTGAACTGAATTGAATAGTTAATAGGACTAGTGTGTGTATTTCTTGCAGCCTTTGCAGTTTGATTCTACCTTAGTAGAATGTGGGATATTCTTGGTAGCAGAAGATGGGGATCATGCACTATATTTCTGTGCCCTATATCTTTTTCACTGGTCCAGCTCAGGTTTATTTCTCAGTCTCTGCTTTGCATATCCATCCACCAATGAAGTATGTTATAAACCTGATATGAGATTTGGTGTTGTAAACTATTCAAGCATCCTTTGCTGTTCCTGAAATAGTTTGAAATTAGTGAACTGTTGTTAAGTTACCAGTCTTTGACCTCAGTTTTTCTGTTTCACAG
Seq C2 exon
CATTATTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGAGAAGAGCCATGGGTTCAAAGACCCCTGGAGTTCAAGGACAGTTCTGAAGAGCTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381:ENSBTAT00000053980:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]