HsaINT0188289 @ hg38
Intron Retention
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:HGNC:13146]
Coordinates
chr16:3313049-3317022:+
Coord C1 exon
chr16:3313049-3313175
Coord A exon
chr16:3313176-3316911
Coord C2 exon
chr16:3316912-3317022
Length
3736 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TCATTTTGTCCATTTGACAGCAT
3' ss Score
4.81
Exon sequences
Seq C1 exon
AGCTTGTTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTATTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAGGAAAACTATGAGACTGTCATCTCTCTAG
Seq A exon
GTAAAGATTTTCCCTTCCCTTTATGTAGTTGAGTACTCTATTCTTGGCTTACTGAGAAGGAACCCCAGTGAGGGGTGTCTTACTGTTCCAGGAGCTGGTTGATTCTCATCTAGATGGTATAGGGGAGGGTGTAGGTAGTGTATCCAGATCACCTGTGGAGCTTTTTCCAAATGTACATGCCGATTGCTTATCCCACATTGAGTCCTTTATCCTTTCCTTCTCTTTTCCACCAAACTTCCTCTTCTGTGTCTTACTTATCTCAGTAAGGGGCACATTCATTATCCAGTGGCTCAAGGCATACAAAGTAACAGTTTTCCTTTATTCTGATCTTGTCATCATACCCCACTGTTAATTCATTAGCAAGTTTTCTTAGCTTTACTTTGACATATCCTGACTGCAACAATGTCTCATCTTCTTGCACTGTTAGCATCCTGGTGTAAGCCAGTGTCATCTTGAACCAGGCATACATGCGTAGCTTTTTAACAGGTGCGCCTGCATCTCCTTGTGCCCTTCCACAGTCTGTTTTCTATACAGAAGCTAGATTGATCTTTTAAAAACCTAATCAGATCATGACATTTCCTTTCCTCAAAAGCATGTGGTCACTTACATTCAGAAAAAAAAGTCTGATATTACCAGGGCTCCAGGACACTCTACAGTCTGGTTCCTGCTCATCTGTCTGCCCTCATTTGCTACTGAAGCCCTTGCTCAGTCCTCACCAGCCACTTAGCTAGTCTCCTTGCTGTTAATTGAATTTGTCAAGTTCATTTTTACCCTCTTGTTTCATTTTATTTGGCACACTGGGCTTCCTGAATACTTCATTTTCAAATTGAGTACATCTAAGTTTTGCTCAACTCAGAAAAATGTATATCATGCAAGGGGAAAAAACGCTATATATATATATCTTTTTATTAACTTTCCTCTTGAAAACTGAGGATAATCATCTGGGGAACCGGTTCTAGGGGCTGGTAGACACTTGGTTCTAATTTACAAAGAACCAAGTGGTTACCATACACACTCTTAAAAAGGTGTCCTATCTTTCCAGAAAGAATCAGGATTTTCTGTATTTTAGAAATGAGCTAAGGATGATCATAGAAACAAGAGAAATATCCTCTGGCTCTTTTCCACCCACAGCTGTGCCTGCTCAACAGATTTTAGTCTTTCCTGAGCAGACAAACACCAAAGACTGGACAGTGGCACCTGAGCTCCTCTTGCCTCAGTCCCAGTTGAGCTGTGCTTTCCAGCAGTGTAGGGCTACCTGAGCATGACCTTATCTGCCTTTCCCTGCTGCCCAAGACCCACACTGCCCAGCATGTGCCCTGAGGCATGTTAGCCCCAGAGGTTCTACCCTGGACAATTAGGCTTGGCCCAGAGGGAACTGGGTACCTCCTAGGCTGTTTGCTGATCCCTTGGCTCCTTTTCTTCTGCCTTCGCCCCCGTGGGCCCCCGCCTTTTTTTTTCTTAAATCGTATTCTGTTAATTTCTTTAGCACCTGGCCTACCATGCAGTTCATACGCAGTTAGGCTGCTTCTGCAGTGGCAAGTTCAGAGCTGAAGTCCATTCTCTTCTTTAGAGCTTGTTGACATTTGAAGAAGTGGCCATATATTTTTCTCAGGAAGAATTGGAGTTACTGGATTACACTCAGAAGGCCCTCTACAATGATGTAATGCAGGAAAACTGTAAGACTGTCATTTGTCTAGGTAAAGATTCTCCCTTCTTTTTGTGTAGAAGTTGAGCAATCTGTTCTCAGTTTACTGAGAATGAACCTCTGTGAGAGGGTCTCAGTGTTCCAGGAGCTGGTTGATTCTCAACTAGATAGTGTAGCGGAGGGTGTAGGTGGTGTATCCAGATCACCTGGGGAGCTTTTCCAGATGTACGTGCTCATTCCTTGTCCTACGTGGAGATCTTGATCCCTTCCCTTTCCCTTTCCCCAAACCTTCTCCATCATGTTTTTCCCATCTCAGTAAGGGGCATCAGCATTATCCAGTTGCTCAGGGCAAACAAAGTACTGTCATGTTTTTTTTTTTTTTTTTTTTTGAGATGGAGCCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCAGTGCAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCGTCAGCCTCCCAAGTAGCTGAGACTACAGGTGCCCGCCACCATGCCCAGCTAATTTTTTTTGTATTTTTTTAGTAGAGATAGGGTTTCATCATGTTAACCAGGATGGTCTCCATCTCCTGACCTTGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCCAGCTAGTACTGTCATCTTTTACCCTGATCTTGCCATCATACCCCACTGTTAATTCATTAGCAAGTTTTCTTAGCTCTACTTTGACATATCCTGACTGCAACCATGTTTCAGCCCCTTGCACTGCCAGCATCCTGATCTAAGCCAGTGTCATCTTGAAGCAGATCAATGTCAGTAGCTTTCTAACAGGTCCCCCTGCCTTCGCTCTTGTCCTCCCACAGTCTGTTTTCTACACAGAACCCCAACTGATTTTTTGAAAACCTGATCAGATCGTTGCATTTCCTTGTTTCAGAAGCCTGTGGTTACTTCCTAACCATATTTGGAGAAAAATCTAAACTTCTTACCAAGGCCTCAGGACCCTCCATGGTCTGGCTCCTATGGAGTTCTTTGCACATGTGTCCTGCTACTGGTGCGCTTGTGCACTCAGTCCTTAGCCACACTGGTTGTCTTTCTGTTACTTGAACTCGCCAGGCTCATTTCTACTTTTCCTTTGCCTTGCATACTTTTCTGCCATGTGACAAAACTCACTTTTAGGTTTCTGCTCAAGTATTACTTTCTCAAAGAGGTGTCCCACAAGACCTTATCTAAAATAGCTTTACAGGAGCAGAATCTTAAATACTCTTTACCGTGATTTAATTTTCTTTAAAACATTTATCACTCCCTGACATTATTTTGTTTATTGATTGATTGTGCCATCCCTCTACTGTAATGTAAAGTCCGTGAAATCAGGGGTCTTCTTCACTACTATATCCCTAGCCCTCGAGCAGTGCCTAACACACCATAGCCACTCAATACATGTTTGTTGAATGAATGAGTGAGAGAGTTTCATACCTTGTAATCCGTAATTAGAGAAACTTCACCAAGTGATTTTGGTCTATTTCTTCTACCTGCATATGAACCAGTAATCTATAGGAATGGTAGAAATCTATCCTAGTTGAGGGCCAGTGGCTAAGGAATAAAGGCTAAATAAAAAGTAGCTGTAATTATAATAGTAATCACTTGTGCTTATGATACTCAAGTCAGCGTCCTTCACATTGGCTTTGCCATACCTGGTCTTATCCAGGCTGAGTCCTTCTGAAGAGTTAATAAGACCAGCTTATATTCCCTGCAACTTCTGGAGCTTGGTTCCCCCTTGGTTGGATATAGGGTATTGATGGCAAAAGAGAGAGAACATGTACTGGATTCCCATTCCCTATATCCTTTTCATTGATCCACCGTAGATTTATTTCTTAGTCTCTGCTTTGCATAGCTACCTATAAGTATAACATAGTATAAACGTGATACTTAATCTTGGAGTCTATCCATTTAACCATTTGGAGTAACAAATTGTAAAATGTCTTTGGTCATCCTGAAACAGTCTGGGATTAGTGGACCAGTTCACTGTTAAGTTACCAGTCCTTGACCTCATTTTGTCCATTTGACAG
Seq C2 exon
CATTGTTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGGGAAGAGCCATGGGTTCAAGTATCCCCGGAGTTTAAGGATAGTGCCGGAAAATCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086:ENST00000574298:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.259
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains