BtaEX6108965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046098 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr25:18557620-18560929:+
Coord C1 exon
chr25:18557620-18557747
Coord A exon
chr25:18557840-18557939
Coord C2 exon
chr25:18560810-18560929
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTCCCCTTCTAGGTA
3' ss Score
13.64
5' ss Seq
GAGGTAGTA
5' ss Score
4.45
Exon sequences
Seq C1 exon
GACAATCCAGAGAAAACTGCTGCCACCATAAGAGGGAATTTTTACGTCACTGGAGACAGAGGAGTGATGGACAGTGATGGTTATTTCTGGTTTGTTGGCAGAGCTGATGATGTCATCATATCCTCTGG
Seq A exon
GTACCGTATTGGGCCATTTGAAGTGGAGAGTGCACTAATTGAGCACCCAGCAGTCGTTGAATCAGCTGTTGTCAGCAGTCCAGATCCAGTCAGAGGAGAG
Seq C2 exon
GTAGTGAAAGCTTTTGTTGTTTTATCTGCACCCTTTAAATCATCCAACCCAGAGAAATTAACTCTTGAACTTCAGGATCATGTAAAAAAATCAACTGCACCTTACAAGTATCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046098-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGAAAACTGCTGCCAC
R:
TTTCTTGGATACTTGTAAGGTGCAGT
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]