Special

GgaEX1003834 @ galGal3

Exon Skipping

Description
NA
Coordinates
chr14:15236001-15237067:-
Coord C1 exon
chr14:15236940-15237067
Coord A exon
chr14:15236711-15236810
Coord C2 exon
chr14:15236001-15236120
Length
100 bp
Sequences
Splice sites
3' ss Seq
TATCTGAATTTTTCTCCTAGGTA
3' ss Score
8.94
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GATAACCCAGAGAAAACTGCTGCCTGCATGACTGGAAACTTTTACGTCACTGGAGACAGAGGGATTATGGATGAAGAAGGATATGTCTGGTTTGTTGGAAGAGCTGATGATATAATTAATTCTGCTGG
Seq A exon
GTATCGTATTGGTCCATTTGAAGTTGAAAGTGCATTAATACAACACCCGGCAGTCTCAGAGTCAGCTGTTGTCAGCAGTCCTGATCCAATTCGAGGGGAG
Seq C2 exon
GTAGTCAAAGCCTTCGTTGTTTTGGCTCCTGCTTTTGCATCACACGACCCAGAAAAACTAACTCATGATCTTCAGCAACATGTCAAAAAGGTGACTGCTCCTTACAAGTACCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.029 C2=0.075
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGAGAAAACTGCTGCC
R:
TCTGGGGTACTTGTAAGGAGCA
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]