BtaEX6108947 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18231211-18233960:+
Coord C1 exon
chr25:18231211-18231338
Coord A exon
chr25:18231424-18231523
Coord C2 exon
chr25:18233841-18233960
Length
100 bp
Sequences
Splice sites
3' ss Seq
AGTTTGTTTTTCTCTTCCAGCTA
3' ss Score
9.61
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GACAACCCTGAGAAGACAGCAGCATCAGAACGAGGGGACTTCTACATCACAGGGGACCGAGCCCACATGGATAAGGATGGCTACTTTTGGTTCATGGGAAGAAATGATGACGTGATCAATTCCTCAAG
Seq A exon
CTACCGGATCGGGCCTGTTGAGGTGGAGAGTGCACTTGCTGAGCACCCAGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCGGACCCCATTAGAGGGGAG
Seq C2 exon
GTGGTAAAGGCATTTATAGTTCTTTCTCCAGCCTATTCCTCGCATGACCCAGAGAAACTAACCCAAGAACTCCAGGAGCATGTGAAAAGGGTGACTGCTCCATACAAGTACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.000 C2=0.225
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCTGAGAAGACAGCAGC
R:
CCTGGGGTACTTGTATGGAGC
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]