MmuEX6013564 @ mm9
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:126684119-126685950:+
Coord C1 exon
chr7:126684119-126684246
Coord A exon
chr7:126684325-126684424
Coord C2 exon
chr7:126685831-126685950
Length
100 bp
Sequences
Splice sites
3' ss Seq
AGTTTGCTTTTCTCTTCCAGCTA
3' ss Score
8.99
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GACAATCCCGAGAAGACAGCAGCATCAGAGCAAGGAGACTTTTACATCACTGGGGACAGAGCACATATGGACGAGGATGGCTACTTTTGGTTCTTGGGGAGAAATGATGATGTAATCAACTCTTCAAG
Seq A exon
CTACCGGATTGGTCCTGTTGAAGTAGAGAGTGCACTTGCTGAGCATCCAGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCAGACCCCATCCGGGGAGAG
Seq C2 exon
GTGGTAAAGGCATTTATAGTCCTTTCTCCAGCCTATGCATCTCATGACCCAGAAGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGACAGTGACTGCTCCATACAAGTACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCCCGAGAAGACAGCAGC
R:
CCTGGGGTACTTGTATGGAGC
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: