RnoEX0006239 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189262282-189264672:+
Coord C1 exon
chr1:189262282-189262409
Coord A exon
chr1:189262672-189262771
Coord C2 exon
chr1:189264553-189264672
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCTTGACTCTTCTCTTCCAGCTA
3' ss Score
8.19
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GACAATCCTGAGAAGACAGCAGCATCAGAGCAAGGAGACTTTTACATCACTGGGGACCGAGCACATATGGACGAGGACGGCTACTTTTGGTTCGTGGGGAGAAATGATGATGTAATCAACTCTTCAAG
Seq A exon
CTACCGGATTGGGCCTGTGGAAGTAGAGAGTGCACTGGCTGAGCATCCGGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCAGACCCCATCCGGGGAGAG
Seq C2 exon
GTGGTAAAGGCGTTTATAGTCCTTTCTCCAGCCTATGTGTCTCATGACCCAGAAGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGACAGTGACTGCTCCATACAAGTACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211-'20-23,'20-20,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCCTGAGAAGACAGCAGC
R:
CCTGGGGTACTTGTATGGAGC
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]