GgaEX6013244 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14920959-14921845:+
Coord C1 exon
chr14:14920959-14921086
Coord A exon
chr14:14921202-14921301
Coord C2 exon
chr14:14921726-14921845
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCTTTATCTTCATTTTAAAGATA
3' ss Score
8.23
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GATGATCCAGAGAAAACAAAGGCAACAGTCCGTGGGGATTTCTATGTTACTGGAGACAGGGGGCTCATGGATGAAGATGGATACTTCTGGTTTGTTGGAAGAGCTGATGATGTCATTAATTCTGCTGG
Seq A exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
Seq C2 exon
GTAGTGAAAGCCTTTGTTGTTTTAACGCCCAACTACGTCTCACATGATCCAGAAAAAATGATGAAAGATCTACAAGATCACGTTAAGAAAGCTACTGCTCCATACAAGTATCCTCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGAAAACAAAGGCAACAGT
R:
GGATACTTGTATGGAGCAGTAGC
Band lengths:
236-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]