MmuEX6013607 @ mm9
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126924264-126927483:+
Coord C1 exon
chr7:126924264-126924391
Coord A exon
chr7:126924482-126924581
Coord C2 exon
chr7:126927364-126927483
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCATGTTTTCCTAGTTA
3' ss Score
7.01
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GATAATCCTTCCAAAACGGCTTCAACTCTACGAGGGAGTTTCTACATTACTGGGGACAGAGGATATATGGATGAAGATGGCTATTTCTGGTTTGTTGCAAGATCAGATGATATCATATTATCTTCTGG
Seq A exon
TTACCGAATTGGACCATTTGAGGTAGAAAGTGCCCTCATAGAACATCCTTCCATCGCAGAGTCAGCTGTTGTCAGCAGTCCAGACCCCATCAGAGGAGAG
Seq C2 exon
GTAGTAAAGGCTTTTATTGTCCTGAATCCTGATTACAAGTCCCATGATCAAGAGCAACTGAAAAAGGAGATCCAGGAGCACGTGAAGAAGACTACAGCGCCTTACAAATACCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'14-18,'14-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.221
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3),PF148391=DOR=PU(23.1=93.0)
A:
PF131931=AMP-binding_C=PU(32.1=76.5),PF148391=DOR=FE(19.1=100)
C2:
PF131931=AMP-binding_C=FE(48.1=100),PF148391=DOR=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTCCAAAACGGCTTCAACT
R:
TTCTGGGGTATTTGTAAGGCGC
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: