BtaEX6108978 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18652909-18655873:+
Coord C1 exon
chr25:18652909-18653036
Coord A exon
chr25:18653141-18653240
Coord C2 exon
chr25:18655754-18655873
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCTTATGTTTTATTTCCCAGTTA
3' ss Score
8.6
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GATAATCCTACAAAAACAGCTTCAACTCTACGAGGCAATTTCTATATCACTGGGGACAGAGGCTATATGGATGAGGATGGATATTTCTGGTTTGTTTCAAGAGCAGATGATATCATATTATCTTCCGG
Seq A exon
TTACCGAATTGGTCCGTTTGAGGTAGAAAGTGCCCTTATTGAACATCCTGCAGTTGCAGAGTCAGCTGTTGTCAGCAGTCCAGATCCCATCAGAGGAGAG
Seq C2 exon
GTAGTAAAGGCTTTTATTGTTCTGAATCCTGATTACAAGTCACATGATCAAGAACAACTAAAAAAGGAGATTCAGGAGCATGTAAAAAGAAATACAGCACCTTACAAATATCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACAAAAACAGCTTCAACTCT
R:
TTTCTGGGATATTTGTAAGGTGCTGT
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]