GgaEX6013244 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15635037-15635923:+
Coord C1 exon
chr14:15635037-15635164
Coord A exon
chr14:15635280-15635379
Coord C2 exon
chr14:15635804-15635923
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCTTTATCTTCATTTTAAAGATA
3' ss Score
8.23
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GATGATCCAGAGAAAACAAAGGCAACAGTCCGTGGGGATTTCTATGTTACTGGAGACAGGGGGCTCATGGATGAAGATGGATACTTCTGGTTTGTTGGAAGAGCTGATGATGTCATTAATTCTGCTGG
Seq A exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
Seq C2 exon
GTAGTGAAAGCCTTTGTTGTTTTAACGCCCAACTACGTCTCACATGATCCAGAAAAAATGATGAAAGATCTACAAGATCACGTTAAGAAAGCTACTGCTCCATACAAGTATCCTCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGAAAACAAAGGCAACAGT
R:
GGATACTTGTATGGAGCAGTAGC
Band lengths:
236-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]