BtaEX6108967 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046098 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr25:18556826-18557747:+
Coord C1 exon
chr25:18556826-18556906
Coord A exon
chr25:18557044-18557145
Coord C2 exon
chr25:18557620-18557747
Length
102 bp
Sequences
Splice sites
3' ss Seq
AACTGTTTCTTTCATTCTAGATT
3' ss Score
9.44
5' ss Seq
GTGGTACAA
5' ss Score
-0.07
Exon sequences
Seq C1 exon
GGAATAATTTGTGCCAATCAGAAAGGACAAGAAATTAAACCAGGCTCAATGGGGAAAGGAGTACTACCCTACGATGTGCAG
Seq A exon
ATTATTGATGAAAATGGCAATATCCTACCACCTGGAAAAGAAGGGGAAATTGCCCTCAGGCTAACATCTACACGACCCTTCTGTTTCTTCTCTGAATATGTG
Seq C2 exon
GACAATCCAGAGAAAACTGCTGCCACCATAAGAGGGAATTTTTACGTCACTGGAGACAGAGGAGTGATGGACAGTGATGGTTATTTCTGGTTTGTTGGCAGAGCTGATGATGTCATCATATCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046098-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATAATTTGTGCCAATCAGAAAGG
R:
ACATCATCAGCTCTGCCAACA
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]